CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
LOC_Os02g49490
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os02g49490
T10975_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os02g49490.1
CCHC ZF
394
411
ELCFNCNKPGHTVGKCPK
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
65 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ZC3H3
Drosophila melanogaster
FBgn0035900
N
0.000
GG15077
Drosophila erecta
FBgn0107331
N
0.000
GM24934
Drosophila sechellia
FBgn0179796
N
0.000
GD12982
Drosophila simulans
FBgn0184706
N
0.000