CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
LOC_Os03g39250
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os03g39250
T11068_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os03g39250.1
CCHC ZF
338
355
DLCFNCNEPGHMVGKCPK
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
300 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PBANKA_060860
Plasmodium berghei
PBANKA_060860
N
0.000
PCHAS_061040
Plasmodium chabaudi
PCHAS_061040
N
0.000
PFL0510c
Plasmodium falciparum
PFL0510c
N
0.000
PVX_084540
Plasmodium vivax
PVX_084540
N
0.000
PY03482
Plasmodium yoelii
PY03482
N
0.000