CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
LOC_Os06g32820
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os06g32820
T11671_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os06g32820.1
CCHC ZF
591
608
VLCFNCFEPGHFADKCPK
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
600 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Sxl
Drosophila simulans
FBgn0016343
I
0.000
GJ15667
Drosophila virilis
FBgn0202856
I
0.000
GM19131
Drosophila sechellia
FBgn0174033
I
0.000
GE16683
Drosophila yakuba
FBgn0234180
I
0.000
GI16327
Drosophila mojavensis
FBgn0139075
I
0.000
GH12116
Drosophila grimshawi
FBgn0119595
I
0.000
GG12847
Drosophila erecta
FBgn0105123
I
0.000
GF21012
Drosophila ananassae
FBgn0098017
I
0.000
CG3056
Drosophila melanogaster
FBgn0024987
I
0.000
GK16696
Drosophila willistoni
FBgn0218698
I
0.000
GL14245
Drosophila persimilis
FBgn0151850
N
0.000
GA22715-RA
Drosophila pseudoobscura
FBgn0244118
N
0.000