CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LOC_Os09g23920
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os09g23920
T12153_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os09g23920.1
CCHC ZF
649
666
RLCFNCFEPGHFADKCPK
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
599 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ppa005813m
Prunus persica
ppa005813m
N
0.000
GRMZM2G086994
Zea mays
GRMZM2G086994
N
0.000
GRMZM2G036837
Zea mays
GRMZM2G036837
N
0.000
mgf008934m
Mimulus guttatus
mgf008934m
N
0.000
mgf007299m
Mimulus guttatus
mgf007299m
N
0.000
mgf002685m
Mimulus guttatus
mgf002685m
N
0.000
gw1.151.82.1
Selaginella moellendorfii
gw1.151.82.1
N
0.000
Glyma20g36140.1
Glycine max
Glyma20g36140.1
N
0.000
Glyma18g47660.1
Glycine max
Glyma18g47660.1
N
0.000
Glyma14g05460.1
Glycine max
Glyma14g05460.1
N
0.000
Glyma10g31370.1
Glycine max
Glyma10g31370.1
N
0.000
Glyma10g02550.1
Glycine max
Glyma10g02550.1
N
0.000
Glyma10g02540.1
Glycine max
Glyma10g02540.1
N
0.000
Glyma09g38650.1
Glycine max
Glyma09g38650.1
N
0.000
Glyma07g37980.1
Glycine max
Glyma07g37980.1
N
0.000
Glyma02g43510.1
Glycine max
Glyma02g43510.1
N
0.000
Glyma02g17260.1
Glycine max
Glyma02g17260.1
N
0.000
GRMZM2G087032
Zea mays
GRMZM2G087032
N
0.000
GRMZM2G100794
Zea mays
GRMZM2G100794
N
0.000
GRMZM2G107491
Zea mays
GRMZM2G107491
N
0.000
ppa005469m
Prunus persica
ppa005469m
N
0.000
ppa005229m
Prunus persica
ppa005229m
N
0.000
ppa005056m
Prunus persica
ppa005056m
N
0.000
MDP0000804620
Malus x domestica
MDP0000804620
N
0.000
MDP0000535412
Malus x domestica
MDP0000535412
N
0.000
MDP0000319251
Malus x domestica
MDP0000319251
N
0.000
MDP0000285251
Malus x domestica
MDP0000285251
N
0.000
MDP0000243257
Malus x domestica
MDP0000243257
N
0.000
MDP0000207283
Malus x domestica
MDP0000207283
N
0.000
MDP0000178517
Malus x domestica
MDP0000178517
N
0.000
chr2.LjT24P12.40.nd
Lotus japonicus
chr2.LjT24P12.40.nd
N
0.000
chr1.CM1413.200.nd
Lotus japonicus
chr1.CM1413.200.nd
N
0.000
Medtr8g139290
Medicago truncatula
Medtr8g139290
N
0.000
Medtr7g089530
Medicago truncatula
Medtr7g089530
N
0.000
Medtr5g092550
Medicago truncatula
Medtr5g092550
N
0.000
GRMZM2G146514
Zea mays
GRMZM2G146514
N
0.000
cassava43930.valid.m1
Manihot esculenta
cassava43930.valid.m1
N
0.000
cassava35635.valid.m1
Manihot esculenta
cassava35635.valid.m1
N
0.000
LOC_Os01g15350
Oryza sativa
LOC_Os01g15350
N
0.000
GSVIVG00030514001
Vitis vinifera
GSVIVG00030514001
N
0.000
GSVIVG00017774001
Vitis vinifera
GSVIVG00017774001
N
0.000
GSVIVG00010980001
Vitis vinifera
GSVIVG00010980001
N
0.000
XM_002871677.1
Arabidopsis lyrata
fgenesh2_kg.6__1644__AT5G16540.1
N
0.000
XM_002882207.1
Arabidopsis lyrata
fgenesh2_kg.3__226__AT3G02830.1
N
0.000
BRADI4G19010
Brachypodium distachyon
BRADI4G19010
N
0.000
BRADI4G08050
Brachypodium distachyon
BRADI4G08050
N
0.000
BRADI2G58770
Brachypodium distachyon
BRADI2G58770
N
0.000
BRADI2G09350
Brachypodium distachyon
BRADI2G09350
N
0.000
BGIOSIBCE036312
Oryza indica
BGIOSIBCE036312
N
0.000
BGIOSIBCE004747
Oryza indica
BGIOSIBCE004747
N
0.000
ZFN3
Arabidopsis thaliana
AT5G16540-TAIR-G
N
0.000
ZFN1
Arabidopsis thaliana
AT3G02830-TAIR-G
N
0.000
AT2G47850
Arabidopsis thaliana
AT2G47850-TAIR-G
N
0.000
PK29685.1
Cannabis sativa
PK29685.1
N
0.000
LOC_Os01g15460
Oryza sativa
LOC_Os01g15460
N
0.000
LOC_Os01g68860
Oryza sativa
LOC_Os01g68860
N
0.000
LOC_Os11g28270
Oryza sativa
LOC_Os11g28270
N
0.000
cassava29576.valid.m1
Manihot esculenta
cassava29576.valid.m1
N
0.000
cassava19141.valid.m1
Manihot esculenta
cassava19141.valid.m1
N
0.000
cassava17662.valid.m1
Manihot esculenta
cassava17662.valid.m1
N
0.000
cassava12890.valid.m1
Manihot esculenta
cassava12890.valid.m1
N
0.000
cassava12889.valid.m1
Manihot esculenta
cassava12889.valid.m1
N
0.000
cassava11170.m1
Manihot esculenta
cassava11170.m1
N
0.000
30128.m009030
Ricinus communis
30128.m009030
N
0.000
29726.m004014
Ricinus communis
29726.m004014
N
0.000
29647.m002009
Ricinus communis
29647.m002009
N
0.000
29620.m000559
Ricinus communis
29620.m000559
N
0.000
XM_002880280.1
Arabidopsis lyrata
scaffold_403761.1
N
0.000
SB05G013190
Sorghum bicolor
Sb05g013190
N
0.000
Sb03g043810
Sorghum bicolor
Sb03g043810
N
0.000
B9IAL1_POPTR
Populus trichocarpa
POPTR_0014s15770
N
0.000
B9GTS9_POPTR
Populus trichocarpa
POPTR_0002s21790
N
0.000
LOC_Os12g21700
Oryza sativa
LOC_Os12g21700
N
0.000
PK23881.1
Cannabis sativa
PK23881.1
N
0.000