CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_fgenesh2_pg.C_2010031
(
Branchiostoma floridae
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
estExt_fgenesh2_pg.C_2010031
T13613_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_fgenesh2_pg.C_2010031
CCHC ZF
313
330
EGCFRCGKKGHIRSDCPG
Links
Other
CCHC ZF
family RBPs
Other
Branchiostoma floridae
RBPs
2 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PTTG_07033
Puccinia triticina
PTTG_07033
N
0.722
estExt_fgenesh2_pg.C_9120007
Branchiostoma floridae
estExt_fgenesh2_pg.C_9120007
N
1.000