CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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MEX3C
(
Vicugna pacos
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSVPAG00000003137
T19734_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
CG11360
M122_0.6
Drosophila melanogaster
GAGUDW
RNAcompete
Ray et al.(2013)
RNCMPT00129
0.719
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSVPAP00000002903
KH
1
41
CKIKALRAKTNTYIKTPVRGEEPIFVVTGRKEDVAMAKREI
ENSVPAP00000002903
KH
76
135
TVQVRVPYRVVGLVVGPKGATIKRIQQQTHTYIVTPSRDKEPVFEVTGMPENVDRAREEI
Links
Other
KH
family RBPs
Other
Vicugna pacos
RBPs
157 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
NAB3
Saccharomyces cerevisiae
YPL190C
N
0.000
21543_Multiple
Saccharomyces mikatae
21543_Multiple
N
0.000
22141_YPL190C
Saccharomyces paradoxus
22141_YPL190C
N
0.000
24695_YPL190C
Saccharomyces bayanus
24695_YPL190C
N
0.000
KLLA0E19229g
Kluyveromyces lactis
KLLA0E19229g
N
0.000
ZYRO0G08360g
Zygosaccharomyces rouxii
ZYRO0G08360g
N
0.000