CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LOC_Os05g01910
(
Oryza sativa
)
PUF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00806 (PUF)
IPR001313
LOC_Os05g01910
T24389_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os05g01910.1
PUF
545
579
EIAGHVVEFSADQYGSRFIQQKLETASTEEKDMVF
LOC_Os05g01910.1
PUF
581
615
EIMPQALTLMTDVFGNYVVQKFFEHGSPTQIKELA
LOC_Os05g01910.1
PUF
617
651
QLIGRVLALSLQMYGCRVIQKAIEVVGLDQQTKMV
LOC_Os05g01910.1
PUF
653
687
ELDGHVMRCVRDQNGNHVIQKCIECIPQHAIQFIV
LOC_Os05g01910.1
PUF
689
723
TFYGQVVMLSTHPYGCRVIQRVLEHCDDPTTQQIM
LOC_Os05g01910.1
PUF
726
760
EILQSVCLLAQDQYGNYVVQHVLEHGKPHERSAII
LOC_Os05g01910.1
PUF
762
796
KLIGQIVQMSQQKFASNVIEKCLAFGNPVERQILI
LOC_Os05g01910.1
PUF
805
838
ESEHLEVMMKDQFANYVVQKVLETCDDQQREAIL
Links
Other
PUF
family RBPs
Other
Oryza sativa
RBPs
82 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action