LOC_Os05g01910 (Oryza sativa)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 LOC_Os05g01910 T24389_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os05g01910.1 PUF 545 579
LOC_Os05g01910.1 PUF 581 615
LOC_Os05g01910.1 PUF 617 651
LOC_Os05g01910.1 PUF 653 687
LOC_Os05g01910.1 PUF 689 723
LOC_Os05g01910.1 PUF 726 760
LOC_Os05g01910.1 PUF 762 796
LOC_Os05g01910.1 PUF 805 838

Links

Other PUF family RBPs
Other Oryza sativa RBPs

82 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.757
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.811
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.811
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.811
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.821
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.814
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.810
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.758
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.767
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.762
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.751
cassava9350.m1 Manihot esculenta cassava9350.m1 N 0.715
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.799
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.857
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.764
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.735
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.757
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.768
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.754
mgf011401m Mimulus guttatus mgf011401m N 0.714
mgf015234m Mimulus guttatus mgf015234m N 0.832
mgf015734m Mimulus guttatus mgf015734m N 0.789
MDP0000277305 Malus x domestica MDP0000277305 N 0.708
MDP0000314338 Malus x domestica MDP0000314338 N 0.853
MDP0000319167 Malus x domestica MDP0000319167 N 0.803
MDP0000776183 Malus x domestica MDP0000776183 N 0.846
PDK_20s1515321g002 Phoenix dactylifera PDK_20s1515321g002 N 0.712
ppa000626m Prunus persica ppa000626m N 0.857
ppa000627m Prunus persica ppa000627m N 0.799
ppa000731m Prunus persica ppa000731m N 0.775
MDP0000191652 Malus x domestica MDP0000191652 N 0.753
MDP0000176743 Malus x domestica MDP0000176743 N 0.743
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.950
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.946
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.761
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.762
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.796
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.806
Medtr5g087730 Medicago truncatula Medtr5g087730 N 0.786
MDP0000119814 Malus x domestica MDP0000119814 N 0.711
ppa000898m Prunus persica ppa000898m N 0.706
PK00601.1 Cannabis sativa PK00601.1 N 0.846
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.761
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.775
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.771
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.737
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.854
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.814
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.842
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.961
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.953
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.953
PK01617.1 Cannabis sativa PK01617.1 N 0.762
PK21390.1 Cannabis sativa PK21390.1 N 0.806
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.771
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.764
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.779
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.736
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.961
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 1.000
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.771
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.796
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.743
30143.m001162 Ricinus communis 30143.m001162 N 0.825
30143.m001164 Ricinus communis 30143.m001164 N 0.864
30169.m006300 Ricinus communis 30169.m006300 N 0.712
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.730
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.860
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.811
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.806
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.803
29595.m000292 Ricinus communis 29595.m000292 N 0.764
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.775
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.853
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.796
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.871
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.729
SB03G039600 Sorghum bicolor Sb03g039600 N 0.832
SB04G037410 Sorghum bicolor Sb04g037410 N 0.768
SB09G001090 Sorghum bicolor Sb09g001090 N 0.953
XM_002884744.1 Arabidopsis lyrata scaffold_301182.1 N 0.729
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.803