CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PMAA_095580
(
Penicillium marneffei
)
PUF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00806 (PUF)
IPR001313
PMAA_095580
T25238_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PMAA_095580.t1
PUF
432
464
IVSQAYPLMVNRFGNFLVQRCFEHGTPEQVIAI
PMAA_095580.t1
PUF
467
500
SIKGNTLSLSMDAFGCHVIQKAFDCVPEEHKAMM
PMAA_095580.t1
PUF
507
529
RIPETVIHRYACHVWQKLFELRW
PMAA_095580.t1
PUF
544
575
LRGMWHEVALGETGSLVVQNIFENCVEDEKRP
PMAA_095580.t1
PUF
579
613
EVLANIDLLSHGQFGNWCIQHICEHGALRDKNRAI
PMAA_095580.t1
PUF
621
649
ADYSMDQFASKVVEKCLKIGGPEFLDRYL
PMAA_095580.t1
PUF
664
692
LIDIAGDQYGNYLIQWILVNAAPHQRELV
Links
Other
PUF
family RBPs
Other
Penicillium marneffei
RBPs
30 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
sm
Drosophila melanogaster
FBgn0003435
D
0.000
GA21622-RA
Drosophila pseudoobscura
FBgn0081607
I
0.000
GH22768
Drosophila grimshawi
FBgn0130225
I
0.000
GJ21415
Drosophila virilis
FBgn0208541
I
0.000
GK15699
Drosophila willistoni
FBgn0217702
I
0.000
GE13838
Drosophila yakuba
FBgn0231486
I
0.000