CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GD17272
(
Drosophila simulans
)
RanBP ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00641 (zf-RanBP)
PF00076 (RRM_1)
IPR001876
IPR000504
FBgn0188834
T25715_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0215674
RRM
119
197
IFVSGMDPSTTEQDIETHFGAIGIIKANKRTMKPKIWLYKNKETGASKGEATVTYDDTNAAQSAIEWFDGRDFNGNAIK
FBpp0215674
RanBP ZF
279
308
RDGDWKCNSCNNTNFAWRHEMHRCKTPKGD
Links
Other
RanBP ZF,RRM
family RBPs
Other
Drosophila simulans
RBPs
9 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CC1G_00600
Coprinopsis cinerea
CC1G_00600
N
0.000
PTTG_10569
Puccinia triticina
PTTG_10569
N
0.000
PTTG_10566
Puccinia triticina
PTTG_10566
N
0.000
PTTG_10560
Puccinia triticina
PTTG_10560
N
0.000
PTTG_09337
Puccinia triticina
PTTG_09337
N
0.000
PTTG_05176
Puccinia triticina
PTTG_05176
N
0.000
PTTG_02510
Puccinia triticina
PTTG_02510
N
0.000
PGTG_17297
Puccinia graminis
PGTG_17297
N
0.000
PGTG_10340
Puccinia graminis
PGTG_10340
N
0.000
PGTG_02503
Puccinia graminis
PGTG_02503
N
0.000
Aqu1.201090
Amphimedon queenslandica
Aqu1.201090
N
0.000