CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RO3G_04536
(
Rhizopus oryzae
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
RO3G_04536
T30431_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
RO3T_04535
RRM
27
90
LFVRGLPFNATNEDLEEFFGEIGPVRKCFVVTERFGYVHYAMEEDAQTALTKLKNVKFKGRKIK
RO3T_04535
RRM
137
207
LIVRNLPWKYREADLSKLFNAHGKVHDVKLPRKWEGGPLRGFAFIQFDKVDEAKAAMEALNATEHHGRTIA
RO3T_04535
RRM
319
387
LFVRNLLFESTEEDLKQLFKQWGPVVYAKITRDPVTRLSRGTGFVCMKKKEDAAKCLEEAEALRNLSQK
RO3T_04535
RRM
568
621
KQAKIIRSKDRIDVATNQLRSKGYGFLEFSTHAHALASLRYLNNNPDIFKGKRL
Links
Other
RRM
family RBPs
Other
Rhizopus oryzae
RBPs
1 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
fgeneshMC_pg.5_#_924
Mucor circinelloides
fgeneshMC_pg.5_#_924
N
0.812