CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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nasonia_NCBI_hmm368623
(
Nasonia vitripennis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
nasonia_NCBI_hmm368623
T32226_0.6
DroSpeGe (2008-Jul-18)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
B52
M334_0.6
Drosophila melanogaster
GRUCAACCNGGCGACMG
SELEX
Cook et al.(2011)
802_9111335
0.822
B52
M126_0.6
Drosophila melanogaster
GGASGRV
RNAcompete
Ray et al.(2013)
RNCMPT00134
0.822
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
nasonia_NCBI_hmm368623
RRM
5
67
VFVGGLTYRVRERDLEKFFRKYGRIKEVAMKNGFAFVEFDDYRDADDAVYELNGKELLGERIT
nasonia_NCBI_hmm368623
RRM
108
173
LTVENLSSRVSWQDLKDYMRQAGEVTYADAHKQRRNEGVVEFATYSDLKNAIEKLDDTELNGRRIR
Links
Other
RRM
family RBPs
Other
Nasonia vitripennis
RBPs
87 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
HNRNPA2B1
Homo sapiens
ENSG00000122566
D
0.000
HNRNPA2B1
Anolis carolinensis
ENSACAG00000012992
I
0.000
HNRNPA2B1
Myotis lucifugus
ENSMLUG00000007578
I
0.000
HNRNPA2B1
Macaca mulatta
ENSMMUG00000003619
I
0.000
HNRNPA2B1
Monodelphis domestica
ENSMODG00000000603
I
0.000
Hnrnpa2b1
Mus musculus
ENSMUSG00000004980
I
0.000
HNRNPA2B1
Ornithorhynchus anatinus
ENSOANG00000009159
I
0.000
HNRNPA2B1
Oryctolagus cuniculus
ENSOCUG00000026859
I
0.000
ENSPPYG00000017715
Pongo pygmaeus
ENSPPYG00000017715
I
0.000
HNRNPA2B1
Pan troglodytes
ENSPTRG00000019002
I
0.000
HNRNPA2B1
Pteropus vampyrus
ENSPVAG00000006296
I
0.000
Hnrnpa2b1
Rattus norvegicus
ENSRNOG00000011175
I
0.000
ENSSTOG00000006202
Spermophilus tridecemlineatus
ENSSTOG00000006202
I
0.000
HNRNPA2B1
Taeniopygia guttata
ENSTGUG00000002869
I
0.000
HNRNPA2B1
Tursiops truncatus
ENSTTRG00000000709
I
0.000
HNRNPA2B1
Vicugna pacos
ENSVPAG00000010417
I
0.000
HNRNPA2B1
Meleagris gallopavo
ENSMGAG00000010635
I
0.000
ENSMEUG00000014479
Macropus eugenii
ENSMEUG00000014479
I
0.000
ROA2_BOVIN
Bos taurus
ENSBTAG00000005726
I
0.000
HNRNPA2B1
Canis familiaris
ENSCAFG00000002885
I
0.000
HNRNPA2B1
Choloepus hoffmanni
ENSCHOG00000013832
I
0.000
LOC100401647
Callithrix jacchus
ENSCJAG00000007908
I
0.000
ENSCJAG00000021872
Callithrix jacchus
ENSCJAG00000021872
I
0.000
HNRNPA2B1
Dasypus novemcinctus
ENSDNOG00000012928
I
0.000
Hnrnpa2b1
Dipodomys ordii
ENSDORG00000005482
I
0.000
LOC100068539
Equus caballus
ENSECAG00000000782
I
0.000
HNRNPA2B1
Echinops telfairi
ENSETEG00000018577
I
0.000
Q5ZME1_CHICK
Gallus gallus
ENSGALG00000011036
I
0.000
HNRNPA2B1
Gorilla gorilla
ENSGGOG00000017072
I
0.000
HNRNPA2B1
Loxodonta africana
ENSLAFG00000006902
I
0.000
ENSMEUG00000001084
Macropus eugenii
ENSMEUG00000001084
I
0.000
Ame_R000626
Ailuropoda melanoleuca
Ame_R000626
I
0.000
ENSCPOG00000020972
Cavia porcellus
ENSCPOG00000020972
N
0.000