CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CBG20878
(
Caenorhabditis briggsae
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CBG20878
T33947_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CBG20878
RRM
101
172
LIIRNLPFKTKKEDLQNICSNIGPFAEIVLPPSKKDPKTSAGFGFIQFVKKEDAEKGREYFNSNKILGRAVA
CBG20878
RRM
278
349
VFLRNLSFETKVEQIKEELSKFGQIDLAIICKYKDSGHSKGTAFVHFSTPLEASNCIEGIEDGLIIDNRLVK
CBG20878
RRM
426
501
LCIHNLPQKVNDVKLKELAQKSTSAGAVVTECRVWLDKKRLTPDGKPKSSGFGFIAFKEHMHALECLKKLNNNPDT
Links
Other
RRM
family RBPs
Other
Caenorhabditis briggsae
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CBN12935
Caenorhabditis brenneri
CBN12935
N
0.919
CRE26346
Caenorhabditis remanei
CRE26346
N
0.936
R05H10.2
Caenorhabditis elegans
R05H10.2
N
0.861