CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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SCAF4
(
Anolis carolinensis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSACAG00000002569
T34604_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSACAP00000002626
RRM
564
630
LWLGQLDKRATQQDVGGLLEEFGPIESINMIPPRGCAYIVMVQRQDANRALQKLSRGNFKVNQKSIK
Links
Other
RRM
family RBPs
Other
Anolis carolinensis
RBPs
7 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
si:dkey-50p8.3
Danio rerio
ENSDARG00000077093
N
0.791
ENSGACG00000020580
Gasterosteus aculeatus
ENSGACG00000020580
N
0.791
ENSORLG00000004384
Oryzias latipes
ENSORLG00000004384
N
0.821
ENSTNIG00000009945
Tetraodon nigroviridis
ENSTNIG00000009945
N
0.821
ENSTRUG00000007792
Takifugu rubripes
ENSTRUG00000007792
N
0.821
SCAF4
Takifugu rubripes
ENSTRUG00000009536
N
0.746
SCAF8
Tursiops truncatus
ENSTTRG00000014538
N
0.701