CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ESRP2
(
Bos taurus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSBTAG00000004375
T34785_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
ESRP2
M141_0.6
Homo sapiens
UGGGRAD
RNAcompete
Ray et al.(2013)
RNCMPT00150
0.958
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSBTAP00000005736
RRM
273
341
VRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYI
ENSBTAP00000005736
RRM
400
446
GGADGLLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIE
ENSBTAP00000005736
RRM
491
563
VRLRGLPYTATIEDILSFLGEAAVDIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAAQRCHKKAMKERYVE
Links
Other
RRM
family RBPs
Other
Bos taurus
RBPs
60 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BC1G_05092
Botrytis cinerea
BC1G_05092
N
0.000