CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSCPOG00000021775
(
Cavia porcellus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSCPOG00000021775
T35897_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCPOP00000020115
RRM
2
66
QLAARLQPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQWVLGVPI
ENSCPOP00000020115
RRM
91
157
LYAGSLHFNITEDMLQGIFEPFGRIEGIQLMMDSETGYRFITFSDSKCAKKALEQLDGFGLAGRPMK
ENSCPOP00000020115
RRM
274
331
EIKDDVIDECNKHEGVIRIYVDKNSAQGNVYVKCPSTAAAIAAVNALHGRWFAGKMIT
Links
Other
RRM
family RBPs
Other
Cavia porcellus
RBPs
42 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BGIOSIBCE018032
Oryza indica
BGIOSIBCE018032
N
0.000
LOC_Os05g13630
Oryza sativa
LOC_Os05g13630
N
0.000
LOC_Os05g13650
Oryza sativa
LOC_Os05g13650
N
0.000