CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
Raly
(
Dipodomys ordii
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSDORG00000013400
T36523_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
RALY
M150_0.6
Homo sapiens
UUUUUUB
RNAcompete
Ray et al.(2013)
RNCMPT00159
0.969
HNRNPC
M025_0.6
Homo sapiens
HUUUUUK
RNAcompete
Ray et al.(2013)
RNCMPT00025
0.797
HNRNPCL1
M158_0.6
Homo sapiens
HUUUUUK
RNAcompete
Ray et al.(2013)
RNCMPT00167
0.750
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDORP00000012599
RRM
23
86
VFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFVQYANERHARAAVLGENGRVLAGQTLD
Links
Other
RRM
family RBPs
Other
Dipodomys ordii
RBPs
130 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PGTG_16909
Puccinia graminis
PGTG_16909
N
0.000