CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RBM12B
(
Echinops telfairi
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSETEG00000013005
T36971_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSETEP00000010553
RRM
7
70
LLGLPFVAGPVDIRQFFKGLTIPDGGVHIIGGEVGLAFIIFATDEDARRAVSRSGGLIKDSSVE
ENSETEP00000010553
RRM
151
218
LFLRGLPYLVNEDDVRVFFAGLCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRSFMGSRFIE
ENSETEP00000010553
RRM
274
342
VHLKNLSLNITKRDIKNFFRATDLSNEQITFLYKDDKRTRHALVMFKTLRDFYSALALHKTVVQYRPVY
ENSETEP00000010553
RRM
388
457
IYIRNFPFDVTKVEVQKFFADFSLTDDDIYLFYDDKGVGLGEALVKFRSEEEAMKAESLNRRRFLGTEVL
Links
Other
RRM
family RBPs
Other
Echinops telfairi
RBPs
7 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
RBM12B
Callithrix jacchus
ENSCJAG00000000124
N
0.764
RBM12B
Macaca mulatta
ENSMMUG00000005558
N
0.771
RBM12B
Otolemur garnettii
ENSOGAG00000002979
N
0.793
ENSPPYG00000018745
Pongo pygmaeus
ENSPPYG00000018745
N
0.771
RBM12B
Pan troglodytes
ENSPTRG00000020420
N
0.771
RBM12B
Sorex araneus
ENSSARG00000011845
N
0.834
RBM12B
Tupaia belangeri
ENSTBEG00000000449
N
0.779