CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ESRP2
(
Gasterosteus aculeatus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSGACG00000016359
T37539_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGACP00000021596
RRM
226
295
IRARGLPWQSSDQDIARFFKGLSIAKGGVALCLNAQGRRNGEALVRFINSEHRDLALERHKHHMGSRYIE
ENSGACP00000021596
RRM
327
399
IRMRGLPFTATPQDVLSFLGPESPVTDDAEGLLFVKYPDGRPTGDAFVLFSCEEYAQNALKRHKQILGKRYIE
ENSGACP00000021596
RRM
451
524
VRLRGLPYTAGIEDILEFMGEHTVDIKPHGVHMVLNQQQGRPSGDAFIQMKSPDKSFMVAQKCHKKTMKDRYVE
ENSGACP00000021596
RRM
668
739
VRMQGLPYNTGVKDILSFFQGYQQLQPDAVLILYNFSGQCSGEALITFHSEEIARRAVAERSTQPFYGQQVH
ENSGACP00000021599
RRM
227
296
IRARGLPWQSSDQDIARFFKGLSIAKGGVALCLNAQGRRNGEALVRFINSEHRDLALERHKHHMGSRYIE
ENSGACP00000021599
RRM
328
400
IRMRGLPFTATPQDVLSFLGPESPVTDDAEGLLFVKYPDGRPTGDAFVLFSCEEYAQNALKRHKQILGKRYIE
ENSGACP00000021599
RRM
452
525
VRLRGLPYTAGIEDILEFMGEHTVDIKPHGVHMVLNQQQGRPSGDAFIQMKSPDKSFMVAQKCHKKTMKDRYVE
Links
Other
RRM
family RBPs
Other
Gasterosteus aculeatus
RBPs
55 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Q7ZY29
Xenopus laevis
Q7ZY29
I
0.797
ESRP1
Pan troglodytes
ENSPTRG00000020430
I
0.788
ENSPPYG00000018753
Pongo pygmaeus
ENSPPYG00000018753
I
0.788
ESRP2
Procavia capensis
ENSPCAG00000005215
I
0.779
ESRP2
Ochotona princeps
ENSOPRG00000013401
I
0.760
ESRP1
Oryctolagus cuniculus
ENSOCUG00000001316
I
0.797
ESRP2
Ornithorhynchus anatinus
ENSOANG00000010972
I
0.825
ESRP1
Ornithorhynchus anatinus
ENSOANG00000004746
I
0.797
Esrp1
Mus musculus
ENSMUSG00000040728
I
0.788
ESRP1
Monodelphis domestica
ENSMODG00000007268
I
0.797
ESRP2
Monodelphis domestica
ENSMODG00000005183
I
0.793
ESRP1
Pteropus vampyrus
ENSPVAG00000014513
I
0.793
RGD1560481
Rattus norvegicus
ENSRNOG00000008184
I
0.793
Esrp2
Rattus norvegicus
ENSRNOG00000023177
I
0.770
AAH44002
Xenopus laevis
AAH44002
I
0.797
Ame_R015210
Ailuropoda melanoleuca
Ame_R015210
I
0.793
esrp1
Xenopus tropicalis
ENSXETG00000014667
I
0.797
ESRP1
Vicugna pacos
ENSVPAG00000006566
I
0.802
ESRP1
Tursiops truncatus
ENSTTRG00000004226
I
0.793
ESRP1
Tarsius syrichta
ENSTSYG00000006036
I
0.793
RBM35A
Taeniopygia guttata
ENSTGUG00000011907
I
0.797
RBM35B
Taeniopygia guttata
ENSTGUG00000006986
I
0.899
ESRP1
Sus scrofa
ENSSSCG00000006099
I
0.793
ESRP2
Sorex araneus
ENSSARG00000014176
I
0.770
ESRP1
Macaca mulatta
ENSMMUG00000021112
I
0.779
ESRP2
Myotis lucifugus
ENSMLUG00000005934
I
0.770
ESRP1
Erinaceus europaeus
ENSEEUG00000001673
I
0.788
ESRP1
Equus caballus
ENSECAG00000000784
I
0.793
Esrp2
Dipodomys ordii
ENSDORG00000000665
I
0.751
ESRP2
Dasypus novemcinctus
ENSDNOG00000018588
I
0.774
esrp2
Danio rerio
ENSDARG00000018814
I
0.922
esrp1
Danio rerio
ENSDARG00000011245
I
0.770
ESRP1
Cavia porcellus
ENSCPOG00000012197
I
0.793
LOC100386717
Callithrix jacchus
ENSCJAG00000000043
I
0.793
ESRP1
Canis familiaris
ENSCAFG00000009305
I
0.793
LOC788414
Bos taurus
ENSBTAG00000021838
I
0.797
ESRP2
Anolis carolinensis
ENSACAG00000009900
I
0.885
ESRP2
Echinops telfairi
ENSETEG00000006068
I
0.774
ESRP1
Felis catus
ENSFCAG00000009920
I
0.793
ESRP1
Microcebus murinus
ENSMICG00000008757
I
0.793
ESRP1
Meleagris gallopavo
ENSMGAG00000012042
I
0.783
ESRP2
Meleagris gallopavo
ENSMGAG00000003943
I
0.903
ESRP2
Macropus eugenii
ENSMEUG00000014322
I
0.820
ESRP2
Loxodonta africana
ENSLAFG00000014609
I
0.760
ESRP1
Loxodonta africana
ENSLAFG00000001498
I
0.793
ESRP1
Anolis carolinensis
ENSACAG00000003748
I
0.788
ESRP1
Gorilla gorilla
ENSGGOG00000003627
I
0.788
RBM35A
Gallus gallus
ENSGALG00000015968
I
0.793
ESRP2_CHICK
Gallus gallus
ENSGALG00000003374
I
0.903
ESRP1
Homo sapiens
ENSG00000104413
I
0.788
ESRP1
Tetraodon nigroviridis
ENSTNIG00000018367
N
0.722
ESRP1
Takifugu rubripes
ENSTRUG00000009287
N
0.713
ESRP2
Tetraodon nigroviridis
ENSTNIG00000011350
N
0.813
ESRP2
Oryzias latipes
ENSORLG00000011955
N
0.931
ESRP2
Takifugu rubripes
ENSTRUG00000007941
N
0.934