CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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A5A2G2_CHICK
(
Gallus gallus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSGALG00000002413
T37614_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
bru-3
M117_0.6
Drosophila melanogaster
KUGKUGU
RNAcompete
Ray et al.(2013)
RNCMPT00122
0.886
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGALP00000003792
RRM
11
79
LFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGAS
ENSGALP00000003792
RRM
278
348
LFIYHLPQEFGDAELMQMFLPFGNVISSKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLK
Links
Other
RRM
family RBPs
Other
Gallus gallus
RBPs
60 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CBN16829
Caenorhabditis brenneri
CBN16829
N
0.000
CRE11521
Caenorhabditis remanei
CRE11521
N
0.000
rnp-2
Caenorhabditis elegans
K08D10.4
N
0.000