CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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XM_001364715.1
(
Monodelphis domestica
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSMODG00000000152
T39023_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMODP00000000175
RRM
46
116
VYLGHLPRGLYEPQLKEYFTQFGTVKRLRLSRSKKTGNSKGYGFLEFESDDVAKIVADTMNNYLFCERLLK
ENSMODP00000000176
RRM
17
87
VYLGHLPRGLYEPQLKEYFTQFGTVKRLRLSRSKKTGNSKGYGFLEFESDDVAKIVADTMNNYLFCERLLK
ENSMODP00000036295
RRM
47
117
VYLGHLPRGLYEPQLKEYFTQFGTVKRLRLSRSKKTGNSKGYGFLEFESDDVAKIVADTMNNYLFCERLLK
ENSMODP00000036296
RRM
49
119
VYLGHLPRGLYEPQLKEYFTQFGTVKRLRLSRSKKTGNSKGYGFLEFESDDVAKIVADTMNNYLFCERLLK
Links
Other
RRM
family RBPs
Other
Monodelphis domestica
RBPs
35 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
MKI67IP
Anolis carolinensis
ENSACAG00000004655
N
0.718
ENSMODG00000008447
Monodelphis domestica
ENSMODG00000008447
N
0.958
MKI67IP
Ornithorhynchus anatinus
ENSOANG00000007522
N
0.789
MKI67IP
Oryctolagus cuniculus
ENSOCUG00000007451
N
0.761
MKI67IP
Otolemur garnettii
ENSOGAG00000016968
N
0.746
MKI67IP
Oryzias latipes
ENSORLG00000018551
N
0.732
ENSPPYG00000018557
Pongo pygmaeus
ENSPPYG00000018557
N
0.718
ENSPPYG00000025875
Pongo pygmaeus
ENSPPYG00000025875
N
0.746
MKI67IP
Pan troglodytes
ENSPTRG00000012419
N
0.732
MKI67IP
Pteropus vampyrus
ENSPVAG00000016707
N
0.761
MKI67IP
Tetraodon nigroviridis
ENSTNIG00000017831
N
0.775
MKI67IP
Takifugu rubripes
ENSTRUG00000005206
N
0.775
MKI67IP
Tursiops truncatus
ENSTTRG00000005849
N
0.761
MKI67IP
Vicugna pacos
ENSVPAG00000005847
N
0.789
mki67ip
Xenopus tropicalis
ENSXETG00000000839
N
0.831
Ame_R009999
Ailuropoda melanoleuca
Ame_R009999
N
0.746
MKI67IP
Macaca mulatta
ENSMMUG00000020928
N
0.746
MKI67IP
Microcebus murinus
ENSMICG00000015787
N
0.732
MK67I_BOVIN
Bos taurus
ENSBTAG00000019387
N
0.775
MKI67IP
Canis familiaris
ENSCAFG00000004710
N
0.746
MKI67IP
Choloepus hoffmanni
ENSCHOG00000002227
N
0.845
LOC100386303
Callithrix jacchus
ENSCJAG00000013386
N
0.718
mki67ip
Danio rerio
ENSDARG00000040666
N
0.761
LOC100055172
Equus caballus
ENSECAG00000018478
N
0.789
MKI67IP
Erinaceus europaeus
ENSEEUG00000008535
N
0.761
MKI67IP
Felis catus
ENSFCAG00000010787
N
0.732
MKI67IP
Homo sapiens
ENSG00000155438
N
0.732
MKI67IP
Gasterosteus aculeatus
ENSGACG00000001551
N
0.718
MKI67IP
Gallus gallus
ENSGALG00000011650
N
0.859
MKI67IP
Gorilla gorilla
ENSGGOG00000023498
N
0.732
ENSGGOG00000025506
Gorilla gorilla
ENSGGOG00000025506
N
0.704
MKI67IP
Loxodonta africana
ENSLAFG00000030731
N
0.845
MKI67IP
Meleagris gallopavo
ENSMGAG00000011953
N
0.845
Q7SYS2
Xenopus laevis
Q7SYS2
N
0.789