CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSPPYG00000010234
(
Pongo pygmaeus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSPPYG00000010234
T40515_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
SNRNP70
M068_0.6
Homo sapiens
RWUCAAG
RNAcompete
Ray et al.(2013)
RNCMPT00070
1.000
snRNP70K
M134_0.6
Drosophila melanogaster
AUCAHG
RNAcompete
Ray et al.(2013)
RNCMPT00143
0.775
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPPYP00000011458
RRM
105
175
LFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVL
Links
Other
RRM
family RBPs
Other
Pongo pygmaeus
RBPs
64 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
KIAA0020
Takifugu rubripes
ENSTRUG00000004074
N
0.000