CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GRMZM2G043150
(
Zea mays
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
GRMZM2G043150
T54037_0.6
MaizeSequence (2009-Oct-16)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
GRMZM2G043150_P02
RRM
98
164
VYVGGIASDVSSDDLKKLCESVGEVVEVRMPGKSGRLYAFVNFRTKELASKAIQKLNNKDLKGKKIR
GRMZM2G043150_P02
RRM
174
243
LFIGNIPYNWTENEFKKAAEEVGPGVLKVNLVKAPHSDTNKGYGFIEYYNQACAEYAKKMMSTPEFKLDK
GRMZM2G043150_P02
RRM
268
337
LYVKNLPKAVTQEQLKKLFEHLGEVTKVVIPPAKAGHENRYGFVHFKERSMAMKALEDTERFELDGQLLD
GRMZM2G043150_P03
RRM
98
164
VYVGGIASDVSSDDLKKLCESVGEVVEVRMPGKSGRLYAFVNFRTKELASKAIQKLNNKDLKGKKIR
GRMZM2G043150_P03
RRM
174
243
LFIGNIPYNWTENEFKKAAEEVGPGVLKVNLVKAPHSDTNKGYGFIEYYNQACAEYAKKMMSTPEFKLDK
GRMZM2G043150_P03
RRM
268
337
LYVKNLPKAVTQEQLKKLFEHLGEVTKVVIPPAKAGHENRYGFVHFKERSMAMKALEDTERFELDGQLLD
Links
Other
RRM
family RBPs
Other
Zea mays
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SB05G002300
Sorghum bicolor
Sb05g002300
N
0.798
GRMZM2G075942
Zea mays
GRMZM2G075942
N
0.803
GRMZM2G101867
Zea mays
GRMZM2G101867
N
0.803