CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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fgenesh1_pm.C_scaffold_69000005
(
Phytophthora ramorum
)
S1
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00575 (S1)
IPR003029
fgenesh1_pm.C_scaffold_69000005
T61227_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
eIF-2alpha
M231_0.6
Drosophila melanogaster
WGCAUG
RNAcompete
Ray et al.(2013)
RNCMPT00273
0.868
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh1_pm.C_scaffold_69000005
S1
35
109
PEIDELVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRVGKNEVVMVLRVDKEKGYIDLSKR
Links
Other
S1
family RBPs
Other
Phytophthora ramorum
RBPs
268 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
fgeneshMC_pg.1_#_1542
Mucor circinelloides
fgeneshMC_pg.1_#_1542
N
0.000