fgenesh1_pm.C_scaffold_69000005 (Phytophthora ramorum)
S1

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00575 (S1) IPR003029 fgenesh1_pm.C_scaffold_69000005 T61227_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
eIF-2alpha
M231_0.6 		Drosophila melanogaster WGCAUG RNAcompete
Ray et al.(2013)
RNCMPT00273 		0.868
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pm.C_scaffold_69000005 S1 35 109

Links

Other S1 family RBPs
Other Phytophthora ramorum RBPs

268 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
eIF-2alpha Drosophila melanogaster FBgn0261609 D 0.868
estExt_Genewise1.C_100122 Postia placenta estExt_Genewise1.C_100122 I 0.882
estExt_fgenesh4_pg.C_220183 Volvox carteri estExt_fgenesh4_pg.C_220183 I 0.829
estExt_fgenesh3_kg.C_30291 Neurospora discreta estExt_fgenesh3_kg.C_30291 I 0.842
estExt_fgenesh2_pm.C_sca_10068 Lottia gigantea estExt_fgenesh2_pm.C_sca_10068 I 0.840
estExt_fgenesh2_pm.C_5760005 Branchiostoma floridae estExt_fgenesh2_pm.C_5760005 I 0.880
estExt_fgenesh2_pm.C_1660010 Branchiostoma floridae estExt_fgenesh2_pm.C_1660010 I 0.880
estExt_fgenesh2_kg.C_40048 Neurospora tetrasperma estExt_fgenesh2_kg.C_40048 I 0.842
estExt_fgenesh2_kg.C_20112 Fragilariopsis cylindrus estExt_fgenesh2_kg.C_20112 I 0.855
estExt_fgenesh1_pm.C_chr_100036 Mycosphaerella graminicola estExt_fgenesh1_pm.C_chr_100036 I 0.855
estExt_fgenesh1_pm.C_210071 Selaginella moellendorfii estExt_fgenesh1_pm.C_210071 I 0.840
estExt_fgenesh1_pg.C_210136 Cochliobolus heterostrophus C5 estExt_fgenesh1_pg.C_210136 I 0.816
estExt_fgenesh1_pg.C_20141 Mycosphaerella fijiensis estExt_fgenesh1_pg.C_20141 I 0.855
estExt_Genewise1.C_100430 Trichoderma atroviride estExt_Genewise1.C_100430 I 0.855
estExt_Genewise1.C_10111 Trichoderma reesei estExt_Genewise1.C_10111 I 0.855
fgenesh1_pm.C_scaffold_10000060 Batrachochytrium dendrobatidis fgenesh1_pm.C_scaffold_10000060 I 0.895
fgenesh1_pg.scaffold_55000187 Physcomitrella patens fgenesh1_pg.scaffold_55000187 I 0.816
fgenesh1_pg.C_scaffold_2000543 Melampsora laricis populina fgenesh1_pg.C_scaffold_2000543 I 0.840
estExt_gwp_gw1.C_3520018 Physcomitrella patens estExt_gwp_gw1.C_3520018 I 0.803
estExt_GenewiseH_1.C_750056 Nematostella vectensis estExt_GenewiseH_1.C_750056 I 0.882
estExt_Genewise1Plus.C_sca_18_chr2_1_00859 Nectria haematococca estExt_Genewise1Plus.C_sca_18_chr2_1_00859 I 0.855
estExt_Genewise1Plus.C_2350006 Capitella teleta estExt_Genewise1Plus.C_2350006 I 0.853
estExt_Genewise1Plus.C_230113 Phycomyces blakesleeanus estExt_Genewise1Plus.C_230113 I 0.773
estExt_Genewise1Plus.C_10999 Thielavia terrestris estExt_Genewise1Plus.C_10999 I 0.842
estExt_Genewise1.C_51162 Mucor circinelloides estExt_Genewise1.C_51162 I 0.787
estExt_Genewise1.C_30452 Schizophyllum commune estExt_Genewise1.C_30452 I 0.855
estExt_Genewise1.C_21511 Trichoderma virens estExt_Genewise1.C_21511 I 0.855
estExt_fgenesh1_kg.C_70012 Micromonas pusilla estExt_fgenesh1_kg.C_70012 I 0.800
estExt_fgenesh1_kg.C_130002 Sporobolomyces roseus estExt_fgenesh1_kg.C_130002 I 0.853
114622 Helobdella robusta 114622 I 0.853
SUI2 Saccharomyces cerevisiae YJR007W I 0.855
THAPSDRAFT_105 Thalassiosira pseudonana Thaps105 I 0.882
SB01G038230 Sorghum bicolor Sb01g038230 I 0.747
B9HSK1_POPTR Populus trichocarpa POPTR_0010s19230 I 0.776
B9HHU6_POPTR Populus trichocarpa POPTR_0008s07250 I 0.776
PHUM551010 Pediculus humanus PHUM551010 I 0.868
PHATRDRAFT_34538 Phaeodactylum tricornutum Phatr34538 I 0.855
NCU08277 Neurospora crassa NCU08277 I 0.842
LOC_Os07g49220 Oryza sativa LOC_Os07g49220 I 0.720
LOC_Os03g18510 Oryza sativa LOC_Os03g18510 I 0.747
ISCW017360 Ixodes scapularis ISCW017360 I 0.842
29607.m000238 Ricinus communis 29607.m000238 I 0.776
69770 Aureococcus anophagefferens 69770 I 0.907
estExt_fgenesh1_kg.C_10157 Myceliophthora thermophila estExt_fgenesh1_kg.C_10157 I 0.842
e_gww2.12.213.1 Phanerochaete chrysosporium e_gww2.12.213.1 I 0.882
e_gwW.11.341.1 Chlamydomonas reinhardtii e_gwW.11.341.1 I 0.842
e_gwh1.12.106.1 Laccaria bicolor e_gwh1.12.106.1 I 0.855
e_gwEuk.2.353.1 Ostreococcus lucimarinus e_gwEuk.2.353.1 I 0.800
e_gw1.7.228.1 Trichoplax adhaerens e_gw1.7.228.1 I 0.853
e_gw.114.57.1 Nematostella vectensis e_gw.114.57.1 I 0.882
Cucsa.239320 Cucumis sativus Cucsa.239320 I 0.776
cassava7659.valid.m1 Manihot esculenta cassava7659.valid.m1 I 0.789
cassava7658.valid.m1 Manihot esculenta cassava7658.valid.m1 I 0.789
cassava16515.m1 Manihot esculenta cassava16515.m1 I 0.787
72304 Aureococcus anophagefferens 72304 I 0.907
GSVIVG00024676001 Vitis vinifera GSVIVG00024676001 I 0.776
Q7ZTK4 Xenopus laevis Q7ZTK4 I 0.880
MDP0000155133 Malus x domestica MDP0000155133 I 0.773
LjSGA_031492.1 Lotus japonicus LjSGA_031492.1 I 0.776
Kwal_15422 Kluyveromyces waltii Kwal_15422 I 0.842
KLTH0B02002g Kluyveromyces thermotolerans KLTH0B02002g I 0.842
KLLA0A11814g Kluyveromyces lactis KLLA0A11814g I 0.867
GSTUMT00002346001 Tuber melanosporum GSTUMT00002346001 I 0.829
genemark.2222_g Pleurotus ostreatus genemark.2222_g I 0.882
fgenesh1_pm.00077_#_3 Aspergillus carbonarius fgenesh1_pm.00077_#_3 I 0.829
estExt_Genewise1Plus.C_80350 Agaricus bisporus estExt_Genewise1Plus.C_80350 I 0.842
estExt_Genewise1.C_110295 Coccomyxa C 169 estExt_Genewise1.C_110295 I 0.829
estExt_Genewise1.C_100332 Chlorella vulgaris estExt_Genewise1.C_100332 I 0.829
estExt_fgenesh2_pm.C_120283 Heterobasidion annosum estExt_fgenesh2_pm.C_120283 I 0.868
MDP0000663428 Malus x domestica MDP0000663428 I 0.776
Pa_6_5980 Podospora anserina Pa_6_5980 I 0.842
AAH46576 Xenopus laevis AAH46576 I 0.880
ZYRO0G12056g Zygosaccharomyces rouxii ZYRO0G12056g I 0.855
YALI0B01034g Yarrowia lipolytica YALI0B01034g I 0.803
XP_801812.1 Strongylocentrotus purpuratus XP_801812.1 I 0.813
XP_779939.1 Strongylocentrotus purpuratus XP_779939.1 I 0.813
XP_002492289.1 Pichia pastoris XP_002492289.1 I 0.855
XP_002156465.1 Hydra magnipapillata XP_002156465.1 I 0.880
XP_001176396.1 Strongylocentrotus purpuratus XP_001176396.1 I 0.813
XP_001176254.1 Strongylocentrotus purpuratus XP_001176254.1 I 0.813
SAKL0G14058g Lachancea kluyveri SAKL0G14058g I 0.855
ppa008120m Prunus persica ppa008120m I 0.776
PMAA_021520 Penicillium marneffei PMAA_021520 I 0.829
estExt_fgenesh2_kg.C_21286 Serpula lacrymans estExt_fgenesh2_kg.C_21286 I 0.868
estExt_fgenesh1_pg.C_Chr_02.00010078 Ostreococcus tauri estExt_fgenesh1_pg.C_Chr_02.00010078 I 0.800
e_gw1.3.2112.1 Cryphonectria parasitica e_gw1.3.2112.1 I 0.829
PredSwiss_EST393.1 Pneumocystis carinii PredSwiss_EST393.1 I 0.855
Medtr3g094740 Medicago truncatula Medtr3g094740 I 0.776
Medtr3g094730 Medicago truncatula Medtr3g094730 I 0.776
Medtr3g094720 Medicago truncatula Medtr3g094720 I 0.789
EAT79164.1 Phaeosphaeria nodorum EAT79164.1 I 0.816
GRMZM2G083262 Zea mays GRMZM2G083262 I 0.747
GRMZM2G058138 Zea mays GRMZM2G058138 I 0.747
PASA_GEN_0500123 Daphnia pulex PASA_GEN_0500123 I 0.882
mgf006782m Mimulus guttatus mgf006782m I 0.776
IGS.gm_12_00191 Chlorella NC64A IGS.gm_12_00191 I 0.840
Glyma18g02820.1 Glycine max Glyma18g02820.1 I 0.776
Glyma11g35600.1 Glycine max Glyma11g35600.1 I 0.776
Scas_Contig479.2 Saccharomyces castellii Scas_Contig479.2 I 0.853
Scas_Contig617.9 Saccharomyces castellii Scas_Contig617.9 I 0.853
e_gw1.18.114.1 Tremella mesenterica e_gw1.18.114.1 I 0.789
EDP42051.1 Malassezia globosa EDP42051.1 I 0.829
Cd36_06510 Candida dubliniensis Cd36_06510 I 0.842
CAGL0B03795g Candida glabrata CAGL0B03795g I 0.829
Ame_R013633 Ailuropoda melanoleuca Ame_R013633 I 0.880
AGR320W Ashbya gossypii AGR320W I 0.855
AB05699.1 Alternaria brassicicola AB05699.1 I 0.816
A7TIH9_VANPO Vanderwaltozyma polyspora A7TIH9_VANPO I 0.855
13294_YJR007W Saccharomyces bayanus 13294_YJR007W I 0.855
12331_YJR007W Saccharomyces paradoxus 12331_YJR007W I 0.855
12209_YJR007W Saccharomyces mikatae 12209_YJR007W I 0.855
BGIBMGA004302 Bombyx mori BGIBMGA004302 I 0.868
fgenesh_newKGs_kg.236__13__EST_ALL.fasta.Contig10263 Emiliania huxleyi fgenesh_newKGs_kg.236__13__EST_ALL.fasta.Contig10263 I 0.907
ANIA_03156 Aspergillus nidulans CADANIAG00009914 I 0.829
VDAG_01930 Verticillium dahliae VDAG_01930 I 0.868
UREG_00217 Uncinocarpus reesii UREG_00217 I 0.842
UM01463 Ustilago maydis UM01463 I 0.803
TRV_03711 Trichophyton verrucosum TRV_03711 I 0.853
TESG_05324 Trichophyton tonsurans TESG_05324 I 0.853
TERG_00559 Trichophyton rubrum TERG_00559 I 0.853
TEQG_01370 Trichophyton equinum TEQG_01370 I 0.853
SPPG_00622 Spizellomyces punctatus SPPG_00622 I 0.907
SNOG_13280 Stagonospora nodorum SNOG_13280 I 0.816
RO3G_13185 Rhizopus oryzae RO3G_13185 I 0.787
RO3G_12494 Rhizopus oryzae RO3G_12494 I 0.787
PTRG_05239 Pyrenophora tritici repentis PTRG_05239 I 0.816
VDBG_01622 Verticillium albo atrum VDBG_01622 I 0.868
WUBG_12485 Wuchereria bancrofti WUBG_12485 I 0.840
AFUA_3G13480 Aspergillus fumigatus CADAFUAG00005171 I 0.808
AFLA_020350 Aspergillus flavus CADAFLAG00003920 I 0.829
ACLA_041660 Aspergillus clavatus CADACLAG00004024 I 0.829
BRADI1G16700 Brachypodium distachyon BRADI1G16700 I 0.760
BGIOSIBCE026135 Oryza indica BGIOSIBCE026135 I 0.720
EIF2 Arabidopsis thaliana AT5G05470-TAIR-G I 0.760
AT2G40290 Arabidopsis thaliana AT2G40290-TAIR-G I 0.776
AGAP011190 Anopheles gambiae AGAP011190 I 0.855
AAEL013675 Aedes aegypti AAEL013675 I 0.829
nasonia_NCBI_hmm338664 Nasonia vitripennis nasonia_NCBI_hmm338664 I 0.868
amel4_ncbi_hmm23817 Apis mellifera amel4_ncbi_hmm23817 I 0.868
PK10564.1 Cannabis sativa PK10564.1 I 0.776
PITG_07885 Phytophthora infestans PITG_07885 I 1.000
SUI2 Candida albicans orf19.6213 I 0.842
CpipJ_CPIJ011194 Culex pipiens CpipJ_CPIJ011194 I 0.855
CPAG_01889 Candida parapsilosis CPAG_01889 I 0.855
CLUG_04130 Candida lusitaniae CLUG_04130 I 0.855
CIMG_00109 Coccidioides immitis CIMG_00109 I 0.855
CHGG_04762 Chaetomium globosum CHGG_04762 I 0.842
CC1G_08524 Coprinopsis cinerea CC1G_08524 I 0.855
CAOG_02542 Capsaspora owczarzaki CAOG_02542 I 0.844
Bm1_04900 Brugia malayi Bm1_04900 I 0.840
BDBG_06604 Blastomyces dermatitidis BDBG_06604 I 0.855
BC1G_14334 Botrytis cinerea BC1G_14334 I 0.855
ARB_05709 Arthroderma benhamiae ARB_05709 I 0.853
AMSG_04936 Thecamonas trahens AMSG_04936 I 0.893
AMAG_01618 Allomyces macrogynus AMAG_01618 I 0.853
CPSG_04829 Coccidioides posadasii CPSG_04829 I 0.855
MGYG_00686 Microsporum gypseum MGYG_00686 I 0.853
MGG_13200 Magnaporthe oryzae MGG_13200 I 0.829
MCYG_00123 Microsporum canis MCYG_00123 I 0.853
LOAG_09556 Loa loa LOAG_09556 I 0.840
LELG_00811 Lodderomyces elongisporus LELG_00811 I 0.855
HCAG_01136 Histoplasma capsulatum HCAG_01136 I 0.867
GLRG_02833 Colletotrichum graminicola GLRG_02833 I 0.868
FVEG_06185 Fusarium verticillioides FVEG_06185 I 0.855
FOXG_08491 Fusarium oxysporum FOXG_08491 I 0.855
FGSG_06220 Fusarium graminearum FGSG_06220 I 0.842
DEHA0F26235g Debaryomyces hansenii DEHA0F26235g I 0.855
CTRG_04191 Candida tropicalis CTRG_04191 I 0.855
AMAG_04113 Allomyces macrogynus AMAG_04113 I 0.853
XM_002881666.1 Arabidopsis lyrata fgenesh2_kg.4__2141__AT2G40290.1 I 0.776
EIF2S1 Spermophilus tridecemlineatus ENSSTOG00000001565 I 0.880
EIF2S1 Sus scrofa ENSSSCG00000002289 I 0.880
EIF2S1 Sorex araneus ENSSARG00000011682 I 0.880
Eif2s1 Rattus norvegicus ENSRNOG00000009432 I 0.880
EIF2S1 Pteropus vampyrus ENSPVAG00000003040 I 0.813
EIF2S1 Pan troglodytes ENSPTRG00000006462 I 0.880
ENSPPYG00000005921 Pongo pygmaeus ENSPPYG00000005921 I 0.880
EIF2S1 Procavia capensis ENSPCAG00000002613 I 0.880
EIF2S1 Oryzias latipes ENSORLG00000011844 I 0.880
EIF2S1 Ochotona princeps ENSOPRG00000004520 I 0.880
IF2A_RABIT Oryctolagus cuniculus ENSOCUG00000012023 I 0.880
EIF2S1 Ornithorhynchus anatinus ENSOANG00000005409 I 0.880
EIF2S1 Taeniopygia guttata ENSTGUG00000011542 I 0.880
EIF2S1 Tetraodon nigroviridis ENSTNIG00000012223 I 0.880
GE15968 Drosophila yakuba FBgn0233524 I 0.868
GK25248 Drosophila willistoni FBgn0227207 I 0.868
GJ19141 Drosophila virilis FBgn0206286 I 0.868
GD15749 Drosophila simulans FBgn0187410 I 0.868
GM13399 Drosophila sechellia FBgn0168330 I 0.868
GL20268 Drosophila persimilis FBgn0157863 I 0.868
GI21763 Drosophila mojavensis FBgn0144493 I 0.868
GG19321 Drosophila erecta FBgn0111525 I 0.868
GF19374 Drosophila ananassae FBgn0096384 I 0.868
GA22144-RA Drosophila pseudoobscura FBgn0082124 I 0.868
EIF2S1 Tursiops truncatus ENSTTRG00000015806 I 0.893
EIF2S1 Takifugu rubripes ENSTRUG00000017958 I 0.880
Eif2s1 Mus musculus ENSMUSG00000021116 I 0.880
EIF2S1 Monodelphis domestica ENSMODG00000009911 I 0.880
EIF2S1 Macaca mulatta ENSMMUG00000021419 I 0.880
EIF2S1 Cavia porcellus ENSCPOG00000003313 I 0.880
LOC100399114 Callithrix jacchus ENSCJAG00000015368 I 0.880
ENSCHOG00000009030 Choloepus hoffmanni ENSCHOG00000009030 I 0.867
ENSCHOG00000004230 Choloepus hoffmanni ENSCHOG00000004230 I 0.853
ENSCHOG00000003744 Choloepus hoffmanni ENSCHOG00000003744 I 0.853
EIF2S1 Canis familiaris ENSCAFG00000016386 I 0.880
IF2A_BOVIN Bos taurus ENSBTAG00000016311 I 0.880
EIF2S1 Anolis carolinensis ENSACAG00000005994 I 0.880
ATEG_04051 Aspergillus terreus CADATEAG00009463 I 0.829
CPIJ011194 Culex quinquefasciatus CPIJ011194 I 0.855
CBG22041 Caenorhabditis briggsae CBG22041 I 0.733
eif2s1l Danio rerio ENSDARG00000005827 I 0.880
eif2s1 Danio rerio ENSDARG00000052178 I 0.880
EIF2S1 Microcebus murinus ENSMICG00000010793 I 0.880
EIF2S1 Meleagris gallopavo ENSMGAG00000011974 I 0.880
EIF2S1 Loxodonta africana ENSLAFG00000013423 I 0.880
EIF2S1 Gorilla gorilla ENSGGOG00000001603 I 0.880
IF2A_CHICK Gallus gallus ENSGALG00000009565 I 0.880
EIF2S1 Gasterosteus aculeatus ENSGACG00000008569 I 0.880
EIF2S1 Homo sapiens ENSG00000134001 I 0.880
EIF2S1 Echinops telfairi ENSETEG00000019003 I 0.880
EIF2S1 Erinaceus europaeus ENSEEUG00000010225 I 0.880
LOC100052709 Equus caballus ENSECAG00000018424 I 0.880
Eif2s1 Dipodomys ordii ENSDORG00000002382 I 0.880
NFIA_063860 Neosartorya fischeri CADNFIAG00005762 I 0.829
XM_002873169.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_6000426 N 0.747
BRADI1G65210 Brachypodium distachyon BRADI1G65210 N 0.733
MDP0000674982 Malus x domestica MDP0000674982 N 0.000
fgeneshHS_pg.scaffold_37000098 Naegleria gruberi fgeneshHS_pg.scaffold_37000098 N 0.737
MDP0000951954 Malus x domestica MDP0000951954 N 0.000