CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ppa002483m
(
Prunus persica
)
YTH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF04146 (YTH)
IPR007275
ppa002483m
T62559_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ppa002483m
YTH
471
561
LFFSVNASAQFCGVAEMVGPVDFDKSLDYWQQDKWSGQFPVKWHMIKDVPNSQFRHIILENNDNKPVTNSRDTQEVKLEHGIEMLNIFKNY
Links
Other
YTH
family RBPs
Other
Prunus persica
RBPs
187 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PK12157.1
Cannabis sativa
PK12157.1
N
0.000
MDP0000705416
Malus x domestica
MDP0000705416
N
0.000
MDP0000383276
Malus x domestica
MDP0000383276
N
0.000
MDP0000311737
Malus x domestica
MDP0000311737
N
0.000
LjSGA_024027.1
Lotus japonicus
LjSGA_024027.1
N
0.000
Medtr8g119740
Medicago truncatula
Medtr8g119740
N
0.000
Medtr8g119730
Medicago truncatula
Medtr8g119730
N
0.000
Medtr8g119670
Medicago truncatula
Medtr8g119670
N
0.000
mgf002249m
Mimulus guttatus
mgf002249m
N
0.000
Glyma05g08450.1
Glycine max
Glyma05g08450.1
N
0.000
Cucsa.131910
Cucumis sativus
Cucsa.131910
N
0.000
cassava24203.valid.m1
Manihot esculenta
cassava24203.valid.m1
N
0.000
28320.m001098
Ricinus communis
28320.m001098
N
0.000
B9HR99_POPTR
Populus trichocarpa
POPTR_0009s13310
N
0.000
B9H161_POPTR
Populus trichocarpa
POPTR_0004s17670
N
0.000
XM_002883129.1
Arabidopsis lyrata
fgenesh2_kg.3__2153__AT3G19360.1
N
0.000
AT3G19360
Arabidopsis thaliana
AT3G19360-TAIR-G
N
0.000
ppa008076m
Prunus persica
ppa008076m
N
0.000