GSVIVG00031538001 (Vitis vinifera)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		GSVIVG00031538001 T00719_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GSVIVT00031538001 CCCH ZF 146 167
GSVIVT00031538001 RRM 282 342

Links

Other CCCH ZF,RRM family RBPs
Other Vitis vinifera RBPs

74 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29223.m000023 Ricinus communis 29223.m000023 N 0.000
30169.m006471 Ricinus communis 30169.m006471 N 0.952
30169.m006472 Ricinus communis 30169.m006472 N 0.824
AT3G51950 Arabidopsis thaliana AT3G51950-TAIR-G N 0.839
AT5G12440 Arabidopsis thaliana AT5G12440-TAIR-G N 0.771
B9GI27_POPTR Populus trichocarpa POPTR_0001s26250 N 0.869
B9GI28_POPTR Populus trichocarpa POPTR_0001s26240 N 0.814
B9GWA9_POPTR Populus trichocarpa POPTR_0003s20310 N 0.880
B9IAR9_POPTR Populus trichocarpa POPTR_0014s16340 N 0.713
BGIOSIBCE010969 Oryza indica BGIOSIBCE010969 N 0.869
BGIOSIBCE010970 Oryza indica BGIOSIBCE010970 N 0.892
BGIOSIBCE026070 Oryza indica BGIOSIBCE026070 N 0.867
BRADI1G17510 Brachypodium distachyon BRADI1G17510 N 0.831
BRADI1G63570 Brachypodium distachyon BRADI1G63570 N 0.798
BRADI4G44040 Brachypodium distachyon BRADI4G44040 N 0.843
cassava2158.valid.m1 Manihot esculenta cassava2158.valid.m1 N 0.897
cassava2159.valid.m1 Manihot esculenta cassava2159.valid.m1 N 0.824
cassava30651.valid.m1 Manihot esculenta cassava30651.valid.m1 N 0.929
cassava30652.valid.m1 Manihot esculenta cassava30652.valid.m1 N 0.929
cassava34046.m1 Manihot esculenta cassava34046.m1 N 0.807
cassava36931.valid.m1 Manihot esculenta cassava36931.valid.m1 N 0.724
cassava7292.valid.m1 Manihot esculenta cassava7292.valid.m1 N 0.855
cassava7293.valid.m1 Manihot esculenta cassava7293.valid.m1 N 0.855
cassava7294.valid.m1 Manihot esculenta cassava7294.valid.m1 N 0.855
cassava9561.m1 Manihot esculenta cassava9561.m1 N 0.855
chr2.CM0018.150.nc Lotus japonicus chr2.CM0018.150.nc N 0.826
Cucsa.166080 Cucumis sativus Cucsa.166080 N 0.904
Cucsa.333940 Cucumis sativus Cucsa.333940 N 0.860
estExt_fgenesh2_pg.C_00420 Selaginella moellendorfii estExt_fgenesh2_pg.C_00420 N 0.000
estExt_fgenesh2_pg.C_80472 Selaginella moellendorfii estExt_fgenesh2_pg.C_80472 N 0.000
e_gw1.136.54.1 Physcomitrella patens e_gw1.136.54.1 N 0.738
e_gw1.31.137.1 Physcomitrella patens e_gw1.31.137.1 N 0.000
Glyma01g43700.1 Glycine max Glyma01g43700.1 N 0.839
Glyma09g35980.1 Glycine max Glyma09g35980.1 N 0.904
Glyma09g35990.1 Glycine max Glyma09g35990.1 N 0.904
Glyma11g01780.1 Glycine max Glyma11g01780.1 N 0.839
Glyma12g01340.1 Glycine max Glyma12g01340.1 N 0.904
Glyma12g01350.1 Glycine max Glyma12g01350.1 N 0.904
GRMZM2G003424 Zea mays GRMZM2G003424 N 0.880
GRMZM2G044004 Zea mays GRMZM2G044004 N 0.821
GRMZM2G086614 Zea mays GRMZM2G086614 N 0.880
GRMZM2G132749 Zea mays GRMZM2G132749 N 0.750
GRMZM2G311665 Zea mays GRMZM2G311665 N 0.867
GRMZM2G346113 Zea mays GRMZM2G346113 N 0.810
GRMZM2G368883 Zea mays GRMZM2G368883 N 0.880
GSVIVG00001467001 Vitis vinifera GSVIVG00001467001 N 0.928
LjT28K11.10.nd Lotus japonicus LjT28K11.10.nd N 0.881
LOC_Os03g21140 Oryza sativa LOC_Os03g21140 N 0.869
LOC_Os03g21160 Oryza sativa LOC_Os03g21160 N 0.892
LOC_Os07g48410 Oryza sativa LOC_Os07g48410 N 0.867
MDP0000120231 Malus x domestica MDP0000120231 N 0.916
MDP0000120462 Malus x domestica MDP0000120462 N 0.892
MDP0000164538 Malus x domestica MDP0000164538 N 0.835
MDP0000214614 Malus x domestica MDP0000214614 N 0.000
MDP0000220601 Malus x domestica MDP0000220601 N 0.857
MDP0000243086 Malus x domestica MDP0000243086 N 0.904
MDP0000256775 Malus x domestica MDP0000256775 N 0.833
MDP0000259773 Malus x domestica MDP0000259773 N 0.833
Medtr4g118330 Medicago truncatula Medtr4g118330 N 0.845
Medtr5g008940 Medicago truncatula Medtr5g008940 N 0.816
mgf000973m Mimulus guttatus mgf000973m N 0.857
mgf002273m Mimulus guttatus mgf002273m N 0.859
mgf014647m Mimulus guttatus mgf014647m N 0.821
PK18074.1 Cannabis sativa PK18074.1 N 0.812
PK20504.1 Cannabis sativa PK20504.1 N 0.729
POPTR_0001s05760 Populus trichocarpa POPTR_0001s05760 N 0.867
ppa002383m Prunus persica ppa002383m N 0.824
ppa002413m Prunus persica ppa002413m N 0.892
ppa003564m Prunus persica ppa003564m N 0.000
ppa019338m Prunus persica ppa019338m N 0.701
ppa023263m Prunus persica ppa023263m N 0.916
SB01G036490 Sorghum bicolor Sb01g036490 N 0.880
SB02G043180 Sorghum bicolor Sb02g043180 N 0.867
SB05G001540 Sorghum bicolor Sb05g001540 N 0.798
SB08G001980 Sorghum bicolor Sb08g001980 N 0.821
XM_002313318.1 Populus trichocarpa POPTR_0009s05510 N 0.814
XM_002873527.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000986 N 0.771
XM_002877790.1 Arabidopsis lyrata fgenesh2_kg.5__1545__AT3G51950.1 N 0.839