cassava7063.valid.m1 (Manihot esculenta)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		cassava7063.valid.m1 T00850_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava7063.valid.m1 CCCH ZF 63 86
cassava7063.valid.m1 RRM 223 283

Links

Other CCCH ZF,RRM family RBPs
Other Manihot esculenta RBPs

24 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R009999 Ailuropoda melanoleuca Ame_R009999 N 0.000
ENSMODG00000008447 Monodelphis domestica ENSMODG00000008447 N 0.000
ENSPPYG00000025875 Pongo pygmaeus ENSPPYG00000025875 N 0.000
LOC100055172 Equus caballus ENSECAG00000018478 N 0.000
LOC100386303 Callithrix jacchus ENSCJAG00000013386 N 0.000
MK67I_BOVIN Bos taurus ENSBTAG00000019387 N 0.000
MKI67IP Tursiops truncatus ENSTTRG00000005849 N 0.000
MKI67IP Ornithorhynchus anatinus ENSOANG00000007522 N 0.000
MKI67IP Oryctolagus cuniculus ENSOCUG00000007451 N 0.000
MKI67IP Otolemur garnettii ENSOGAG00000016968 N 0.000
MKI67IP Oryzias latipes ENSORLG00000018551 N 0.000
mki67ip Xenopus tropicalis ENSXETG00000000839 N 0.000
MKI67IP Pan troglodytes ENSPTRG00000012419 N 0.000
MKI67IP Vicugna pacos ENSVPAG00000005847 N 0.000
MKI67IP Takifugu rubripes ENSTRUG00000005206 N 0.000
MKI67IP Pteropus vampyrus ENSPVAG00000016707 N 0.000
MKI67IP Macaca mulatta ENSMMUG00000020928 N 0.000
MKI67IP Homo sapiens ENSG00000155438 N 0.000
MKI67IP Cavia porcellus ENSCPOG00000007472 N 0.000
mki67ip Danio rerio ENSDARG00000040666 N 0.000
MKI67IP Erinaceus europaeus ENSEEUG00000008535 N 0.000
MKI67IP Felis catus ENSFCAG00000010787 N 0.000
MKI67IP Canis familiaris ENSCAFG00000004710 N 0.000
MKI67IP Gasterosteus aculeatus ENSGACG00000001551 N 0.000
MKI67IP Gallus gallus ENSGALG00000011650 N 0.000
MKI67IP Gorilla gorilla ENSGGOG00000023498 N 0.000
MKI67IP Loxodonta africana ENSLAFG00000030731 N 0.000
MKI67IP Meleagris gallopavo ENSMGAG00000011953 N 0.000
MKI67IP Microcebus murinus ENSMICG00000015787 N 0.000
MKI67IP Choloepus hoffmanni ENSCHOG00000002227 N 0.000
Q7SYS2 Xenopus laevis Q7SYS2 N 0.000
XM_001364715.1 Monodelphis domestica ENSMODG00000000152 N 0.000