CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ZC3H10
(
Anolis carolinensis
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSACAG00000005020
T02223_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
ZC3H10
M083_0.6
Homo sapiens
SSAGCGM
RNAcompete
Ray et al.(2013)
RNCMPT00085
0.887
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSACAP00000004886
CCCH ZF
3
27
SYVICRDFLRNVCKRGKRCRFRHPD
ENSACAP00000004886
CCCH ZF
44
63
CHDFQNKECVRINCRFIHGT
ENSACAP00000004886
CCCH ZF
100
125
EEVPICRDFLKGDCQRGAKCKFQHLQ
Links
Other
CCCH ZF
family RBPs
Other
Anolis carolinensis
RBPs
27 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CELF3
Dasypus novemcinctus
ENSDNOG00000011384
N
0.000
CELF3
Erinaceus europaeus
ENSEEUG00000010622
N
0.000
CELF3
Homo sapiens
ENSG00000159409
I
0.000
CELF3
Microcebus murinus
ENSMICG00000010644
N
0.000
CELF3
Macaca mulatta
ENSMMUG00000016952
I
0.000
CELF3
Takifugu rubripes
ENSTRUG00000012064
I
0.000
CELF3
Tursiops truncatus
ENSTTRG00000009835
N
0.000