CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ZC3H10
(
Canis familiaris
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSCAFG00000000104
T02278_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
ZC3H10
M083_0.6
Homo sapiens
SSAGCGM
RNAcompete
Ray et al.(2013)
RNCMPT00085
1.000
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCAFP00000000145
CCCH ZF
39
62
DAICRDFLRNVCKRGKRCRYRHPD
ENSCAFP00000000145
CCCH ZF
79
98
CHDFQNKECSRPNCRFIHGS
ENSCAFP00000000145
CCCH ZF
135
160
EEVPICRDFLKGDCQRGAKCKFRHLQ
Links
Other
CCCH ZF
family RBPs
Other
Canis familiaris
RBPs
27 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Tbg972.4.4660
Trypanosoma brucei
Tbg972.4.4660
N
0.000
Tbg972.8.8170
Trypanosoma brucei
Tbg972.8.8170
N
0.000
Tc00.1047053509007.40
Trypanosoma cruzi
Tc00.1047053509007.40
N
0.000
TvY486_0014510
Trypanosoma vivax
TvY486_0014510
N
0.000