CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSOCUG00000010180
(
Oryctolagus cuniculus
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSOCUG00000010180
T03051_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOCUP00000008772
CCCH ZF
1
20
RYFLHGVCKEGDNCRYSHDL
ENSOCUP00000008772
CCCH ZF
24
49
PYGVVCKYFQRGYCIYGDRCRYEHSK
ENSOCUP00000008772
CCCH ZF
147
172
TKKQLCPYAAVGECRYGENCVYLHGD
ENSOCUP00000008772
CCCH ZF
305
330
NKACRYFDEGRGSCPFGGNCFYKHAY
Links
Other
CCCH ZF
family RBPs
Other
Oryctolagus cuniculus
RBPs
35 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R004467
Ailuropoda melanoleuca
Ame_R004467
N
0.000
C430048L16Rik
Mus musculus
ENSMUSG00000052137
N
0.000
RBM12B
Tarsius syrichta
ENSTSYG00000012515
N
0.000
Rbm12b
Rattus norvegicus
ENSRNOG00000016330
N
0.000
RBM12B
Pteropus vampyrus
ENSPVAG00000011803
N
0.000
RBM12B
Pan troglodytes
ENSPTRG00000020420
N
0.000
RBM12B
Oryctolagus cuniculus
ENSOCUG00000010353
N
0.000
Rbm12b
Mus musculus
ENSMUSG00000046667
N
0.000
RBM12B
Monodelphis domestica
ENSMODG00000007436
N
0.000
RBM12B
Loxodonta africana
ENSLAFG00000029949
N
0.000
RBM12B
Gorilla gorilla
ENSGGOG00000011909
N
0.000
RBM12B
Homo sapiens
ENSG00000183808
N
0.000
RBM12B
Equus caballus
ENSECAG00000017870
N
0.000
RBM12B
Cavia porcellus
ENSCPOG00000007815
N
0.000
RBM12B
Callithrix jacchus
ENSCJAG00000000124
N
0.000
RBM12B
Choloepus hoffmanni
ENSCHOG00000008934
N
0.000
RBM12B
Canis familiaris
ENSCAFG00000009109
N
0.000
RBM12B
Bos taurus
ENSBTAG00000013408
N
0.000