CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSPPYG00000004644
(
Pongo pygmaeus
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSPPYG00000004644
T03196_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
ZC3H10
M083_0.6
Homo sapiens
SSAGCGM
RNAcompete
Ray et al.(2013)
RNCMPT00085
1.000
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPPYP00000005289
CCCH ZF
39
62
DAICRDFLRNVCKRGKRCRYRHPD
ENSPPYP00000005289
CCCH ZF
79
98
CHDFQNKECSRPNCRFIHGS
ENSPPYP00000005289
CCCH ZF
135
160
EEVPICRDFLKGDCQRGAKCKFRHLQ
Links
Other
CCCH ZF
family RBPs
Other
Pongo pygmaeus
RBPs
27 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
A5HMN7_CHICK
Gallus gallus
ENSGALG00000006066
I
0.000
fgenesh2_pg.scaffold_81000033
Branchiostoma floridae
fgenesh2_pg.scaffold_81000033
N
0.000
fgenesh2_pg.scaffold_93000116
Branchiostoma floridae
fgenesh2_pg.scaffold_93000116
N
0.000
LOC100397507
Callithrix jacchus
ENSCJAG00000004080
I
0.000
MBNL1
Monodelphis domestica
ENSMODG00000015838
I
0.000
mbnl1
Danio rerio
ENSDARG00000052978
N
0.000
MBNL1
Homo sapiens
ENSG00000152601
D
0.000
mbnl2
Danio rerio
ENSDARG00000018460
I
0.000
MBNL2
Equus caballus
ENSECAG00000020574
N
0.000
MBNL3
Macaca mulatta
ENSMMUG00000003071
I
0.000
MBNL3
Homo sapiens
ENSG00000076770
I
0.000
Mbnl3
Mus musculus
ENSMUSG00000036109
I
0.000
XR_020327.1
Pan troglodytes
ENSPTRG00000022280
N
0.000