zc3h10 (Xenopus tropicalis)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 ENSXETG00000009476 T03636_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ZC3H10
M083_0.6 		Homo sapiens SSAGCGM RNAcompete
Ray et al.(2013)
RNCMPT00085 		0.843
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000020903 CCCH ZF 23 44
ENSXETP00000020903 CCCH ZF 61 80
ENSXETP00000020903 CCCH ZF 116 141

Links

Other CCCH ZF family RBPs
Other Xenopus tropicalis RBPs

27 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A5D7H8_BOVIN Bos taurus ENSBTAG00000009542 I 0.843
AAH73459 Xenopus laevis AAH73459 I 0.971
AAI27425 Xenopus laevis AAI27425 I 0.971
Ame_R003830 Ailuropoda melanoleuca Ame_R003830 I 0.843
ENSPPYG00000004644 Pongo pygmaeus ENSPPYG00000004644 I 0.843
LOC100059294 Equus caballus ENSECAG00000013003 I 0.843
LOC100410117 Callithrix jacchus ENSCJAG00000011803 I 0.843
ZC3H10 Pan troglodytes ENSPTRG00000005078 I 0.843
ZC3H10 Pteropus vampyrus ENSPVAG00000007566 I 0.843
Zc3h10 Rattus norvegicus ENSRNOG00000040281 I 0.843
ZC3H10 Sorex araneus ENSSARG00000007208 I 0.843
ZC3H10 Sus scrofa ENSSSCG00000000378 I 0.843
ZC3H10 Spermophilus tridecemlineatus ENSSTOG00000007753 I 0.843
ZC3H10 Tursiops truncatus ENSTTRG00000016415 I 0.843
ZC3H10 Vicugna pacos ENSVPAG00000009524 I 0.843
ZC3H10 Procavia capensis ENSPCAG00000005636 I 0.843
ZC3H10 Canis familiaris ENSCAFG00000000104 I 0.843
ZC3H10 Cavia porcellus ENSCPOG00000002916 I 0.843
ZC3H10 Dasypus novemcinctus ENSDNOG00000000333 I 0.843
Zc3h10 Dipodomys ordii ENSDORG00000001081 I 0.843
ZC3H10 Homo sapiens ENSG00000135482 D 0.843
ZC3H10 Loxodonta africana ENSLAFG00000014817 I 0.843
ZC3H10 Macropus eugenii ENSMEUG00000001222 I 0.857
ZC3H10 Macaca mulatta ENSMMUG00000021084 I 0.843
Zc3h10 Mus musculus ENSMUSG00000039810 I 0.843
ZC3H10 Oryctolagus cuniculus ENSOCUG00000017349 I 0.843
ZC3H10 Anolis carolinensis ENSACAG00000005020 I 0.859