CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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unk
(
Xenopus tropicalis
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSXETG00000012578
T03638_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSXETP00000027519
CCCH ZF
98
120
CTKYDETTGICPDSDECPFLHRT
ENSXETP00000027519
CCCH ZF
302
328
YKSTKCNDMQQSGSCPRGPFCAFAHVE
Links
Other
CCCH ZF
family RBPs
Other
Xenopus tropicalis
RBPs
58 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GRMZM2G173428
Zea mays
GRMZM2G173428
N
0.000