CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CRE28740
(
Caenorhabditis remanei
)
CCHC ZF,KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
PF00013 (KH_1)
IPR001878
IPR018111
CRE28740
T06982_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CRE28740
KH
341
424
DKVWIPQEQFPDLNFVGLLIGPRGNTLKSLEAETGAKIIIRGKGSIKEGKLTNRLGPMPGENEPLHAYVTGTDMNVIKKACEKI
CRE28740
CCHC ZF
464
481
ARCSNCGSDEHKSWECPD
CRE28740
CCHC ZF
489
506
IKCINCGAFGHISKDCKN
Links
Other
CCHC ZF,KH
family RBPs
Other
Caenorhabditis remanei
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
XP_001188786.1
Strongylocentrotus purpuratus
XP_001188786.1
N
0.000
XP_001192826.1
Strongylocentrotus purpuratus
XP_001192826.1
N
0.000
XP_001201671.1
Strongylocentrotus purpuratus
XP_001201671.1
N
0.000