CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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SF1
(
Myotis lucifugus
)
CCHC ZF,KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
PF00013 (KH_1)
IPR001878
IPR018111
ENSMLUG00000015217
T07003_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMLUP00000013868
KH
256
330
PEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENVKKAVEQI
ENSMLUP00000013868
CCHC ZF
385
401
TVCTKCGGAGHIASDCK
Links
Other
CCHC ZF,KH
family RBPs
Other
Myotis lucifugus
RBPs
42 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Aqu1.201624
Amphimedon queenslandica
Aqu1.201624
N
0.000
nasonia_NCBI_hmm212344
Nasonia vitripennis
nasonia_NCBI_hmm212344
N
0.000
nasonia_NCBI_hmm282094
Nasonia vitripennis
nasonia_NCBI_hmm282094
N
0.000
nasonia_NCBI_hmm59264
Nasonia vitripennis
nasonia_NCBI_hmm59264
N
0.000
nasonia_NCBI_hmm70584
Nasonia vitripennis
nasonia_NCBI_hmm70584
N
0.000