CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
estExt_fgenesh1_pm.C_50279
(
Schizophyllum commune
)
CCHC ZF,KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
PF00013 (KH_1)
IPR001878
IPR018111
estExt_fgenesh1_pm.C_50279
T07042_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_fgenesh1_pm.C_50279
KH
205
276
EINFFGLLVGPRGNSLKKMERESGAKISIRGKGSVKEGKSRPDQFADDAEEDLHCLVMADTEEKVALCVKLI
estExt_fgenesh1_pm.C_50279
CCHC ZF
314
331
QICQNCGGIGHRKYDCPE
estExt_fgenesh1_pm.C_50279
CCHC ZF
339
356
IICRVCGSAGHMARDCTV
Links
Other
CCHC ZF,KH
family RBPs
Other
Schizophyllum commune
RBPs
39 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
WUBG_07653
Wuchereria bancrofti
WUBG_07653
N
0.000