LOC100385878 (Callithrix jacchus)
CCHC ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1) 		IPR001878
IPR000504 		ENSCJAG00000015185 T07214_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SRSF7
M353_0.6 		Homo sapiens ACGAGAGAY SELEX
Cook et al.(2011)
954_10094314 		1.000
SRSF7
M331_0.6 		Homo sapiens AGACKACGAY SELEX
Cook et al.(2011)
790_10094314 		1.000
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000028057 RRM 13 78
ENSCJAP00000028057 CCHC ZF 104 120
ENSCJAP00000048214 RRM 13 78
ENSCJAP00000048214 CCHC ZF 104 120
ENSCJAP00000049070 RRM 13 78
ENSCJAP00000049070 CCHC ZF 104 121
ENSCJAP00000051855 RRM 13 78
ENSCJAP00000051855 CCHC ZF 104 121

Links

Other CCHC ZF,RRM family RBPs
Other Callithrix jacchus RBPs

67 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Chro.60316 Cryptosporidium hominis Chro.60316 N 0.000
CMU_007090 Cryptosporidium muris CMU_007090 N 0.000