CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CNBP
(
Myotis lucifugus
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
ENSMLUG00000012554
T10290_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMLUP00000011423
CCHC ZF
4
21
NECFKCGRSGHWARECPT
ENSMLUP00000011423
CCHC ZF
52
68
DICYRCGESGHLAKDCD
ENSMLUP00000011423
CCHC ZF
72
89
DACYNCGRGGHIAKDCKE
ENSMLUP00000011423
CCHC ZF
96
113
QCCYNCGKPGHLARDCDH
ENSMLUP00000011423
CCHC ZF
117
134
QKCYSCGEFGHIQKDCTK
ENSMLUP00000011423
CCHC ZF
135
152
VKCYRCGETGHVAINCSK
ENSMLUP00000011423
CCHC ZF
156
173
VNCYRCGESGHLARECTI
Links
Other
CCHC ZF
family RBPs
Other
Myotis lucifugus
RBPs
50 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_Genewise1.C_50559
Mucor circinelloides
estExt_Genewise1.C_50559
N
0.000