LOC_Os06g07520 (Oryza sativa)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 LOC_Os06g07520 T11568_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os06g07520.1 CCHC ZF 356 373

Links

Other CCHC ZF family RBPs
Other Oryza sativa RBPs

65 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
22086_YPL054W Saccharomyces mikatae 22086_YPL054W N 0.000
23616_YPL054W Saccharomyces paradoxus 23616_YPL054W N 0.000
25080_YPL054W Saccharomyces bayanus 25080_YPL054W N 0.000
A7TTU4_VANPO Vanderwaltozyma polyspora A7TTU4_VANPO N 0.000
AB08315.1 Alternaria brassicicola AB08315.1 N 0.000
ADR062W Ashbya gossypii ADR062W N 0.000
CC1G_08614 Coprinopsis cinerea CC1G_08614 N 0.000
Cd36_85970 Candida dubliniensis Cd36_85970 N 0.000
CHGG_00049 Chaetomium globosum CHGG_00049 N 0.000
CLUG_02022 Candida lusitaniae CLUG_02022 N 0.000
CPAG_02338 Candida parapsilosis CPAG_02338 N 0.000
CTRG_02259 Candida tropicalis CTRG_02259 N 0.000
DEHA0D17303g Debaryomyces hansenii DEHA0D17303g N 0.000
EAT89389.2 Phaeosphaeria nodorum EAT89389.2 N 0.000
estExt_fgenesh1_kg.C_60003 Myceliophthora thermophila estExt_fgenesh1_kg.C_60003 N 0.000
estExt_fgenesh1_pg.C_160206 Cochliobolus heterostrophus C5 estExt_fgenesh1_pg.C_160206 N 0.000
estExt_fgenesh5_pg.C_100355 Trichoderma reesei estExt_fgenesh5_pg.C_100355 N 0.000
estExt_Genewise1.C_60695 Trichoderma atroviride estExt_Genewise1.C_60695 N 0.000
e_gw1.29.29.1 Trichoderma virens e_gw1.29.29.1 N 0.000
FOXG_04082 Fusarium oxysporum FOXG_04082 N 0.000
FVEG_07196 Fusarium verticillioides FVEG_07196 N 0.000
GLRG_01727 Colletotrichum graminicola GLRG_01727 N 0.000
GSTUMT00003772001 Tuber melanosporum GSTUMT00003772001 N 0.000
gw1.2.2109.1 Mucor circinelloides gw1.2.2109.1 N 0.000
gw1.28.197.1 Nectria haematococca gw1.28.197.1 N 0.000
KLLA0B09878g Kluyveromyces lactis KLLA0B09878g N 0.000
KLTH0E11836g Kluyveromyces thermotolerans KLTH0E11836g N 0.000
LEE1 Saccharomyces cerevisiae YPL054W N 0.000
orf19.7385 Candida albicans orf19.7385 N 0.000
Pa_5_7490 Podospora anserina Pa_5_7490 N 0.000
PTRG_01963 Pyrenophora tritici repentis PTRG_01963 N 0.000
SAKL0H10846g Lachancea kluyveri SAKL0H10846g N 0.000
Scas_Contig567.6 Saccharomyces castellii Scas_Contig567.6 N 0.000
SJAG_03191 Schizosaccharomyces japonicus SJAG_03191 N 0.000
SNOG_02658 Stagonospora nodorum SNOG_02658 N 0.000
VDAG_09556 Verticillium dahliae VDAG_09556 N 0.000
VDBG_09822 Verticillium albo atrum VDBG_09822 N 0.000
XP_002493509.1 Pichia pastoris XP_002493509.1 N 0.000
YALI0B12540g Yarrowia lipolytica YALI0B12540g N 0.000
ZYRO0F08690g Zygosaccharomyces rouxii ZYRO0F08690g N 0.000