CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LOC_Os07g41530
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os07g41530
T11877_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os07g41530.1
CCHC ZF
356
373
ELCFNCNKPGHTVGKCPK
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
65 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
29706.m001348
Ricinus communis
29706.m001348
N
0.000
AT1G17640
Arabidopsis thaliana
AT1G17640-TAIR-G
N
0.000
B9MWT9_POPTR
Populus trichocarpa
POPTR_0003s04340
N
0.000
B9N2X8_POPTR
Populus trichocarpa
POPTR_0001s20310
N
0.000
BGIOSIBCE006177
Oryza indica
BGIOSIBCE006177
N
0.000
BGIOSIBCE022335
Oryza indica
BGIOSIBCE022335
N
0.000
BRADI1G37692
Brachypodium distachyon
BRADI1G37692
N
0.000
cassava179.valid.m1
Manihot esculenta
cassava179.valid.m1
N
0.000
Cucsa.360490
Cucumis sativus
Cucsa.360490
N
0.000
GRMZM2G139090
Zea mays
GRMZM2G139090
N
0.000
GRMZM2G139643
Zea mays
GRMZM2G139643
N
0.000
GRMZM2G167356
Zea mays
GRMZM2G167356
N
0.000
GRMZM2G550472
Zea mays
GRMZM2G550472
N
0.000
LOC_Os02g12850
Oryza sativa
LOC_Os02g12850
N
0.000
MDP0000158246
Malus x domestica
MDP0000158246
N
0.000
ppa006895m
Prunus persica
ppa006895m
N
0.000
SB04G007860
Sorghum bicolor
Sb04g007860
N
0.000
SB10G022380
Sorghum bicolor
Sb10g022380
N
0.000