CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
LOC_Os11g06268
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os11g06268
T12335_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os11g06268.1
CCHC ZF
357
374
ELCFNCNKPGHTVGKCPK
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
65 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
A4FUZ2_BOVIN
Bos taurus
ENSBTAG00000015721
N
0.000
Ame_R009605
Ailuropoda melanoleuca
Ame_R009605
N
0.000
ENSPPYG00000010514
Pongo pygmaeus
ENSPPYG00000010514
N
0.000
RAVER1
Monodelphis domestica
ENSMODG00000005584
N
0.000
Raver1
Mus musculus
ENSMUSG00000010205
N
0.000
RAVER1
Oryctolagus cuniculus
ENSOCUG00000020918
N
0.000
RAVER1
Oryzias latipes
ENSORLG00000005458
N
0.000
RAVER1
Pan troglodytes
ENSPTRG00000010466
N
0.000
RAVER1
Pteropus vampyrus
ENSPVAG00000003689
N
0.000
Raver1
Rattus norvegicus
ENSRNOG00000020710
N
0.000
RAVER1
Sus scrofa
ENSSSCG00000013650
N
0.000
RAVER1
Tursiops truncatus
ENSTTRG00000009552
N
0.000
RAVER1
Macaca mulatta
ENSMMUG00000014897
N
0.000
RAVER1
Myotis lucifugus
ENSMLUG00000012328
N
0.000
RAVER1
Canis familiaris
ENSCAFG00000017861
N
0.000
RAVER1
Cavia porcellus
ENSCPOG00000001008
N
0.000
Raver1
Dipodomys ordii
ENSDORG00000010106
N
0.000
RAVER1
Equus caballus
ENSECAG00000024966
N
0.000
RAVER1
Felis catus
ENSFCAG00000009435
N
0.000
RAVER1
Homo sapiens
ENSG00000161847
N
0.000
RAVER1
Gorilla gorilla
ENSGGOG00000006015
N
0.000
RAVER1
Loxodonta africana
ENSLAFG00000003664
N
0.000
RAVER1
Macropus eugenii
ENSMEUG00000003281
N
0.000
RAVER1
Microcebus murinus
ENSMICG00000010326
N
0.000
RAVER1
Anolis carolinensis
ENSACAG00000008386
N
0.000