POPTR_0008s18830 (Populus trichocarpa)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 POPTR_0008s18830 T12723_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0008s18830.1 CCHC ZF 333 350

Links

Other CCHC ZF family RBPs
Other Populus trichocarpa RBPs

10 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9HEP3_POPTR Populus trichocarpa POPTR_0535s00210 N 0.889
B9ILC9_POPTR Populus trichocarpa POPTR_0018s03300 N 0.889
B9IQN6_POPTR Populus trichocarpa POPTR_0019s11840 N 0.833
B9NC13_POPTR Populus trichocarpa POPTR_0145s00200 N 0.833
Cucsa.365550 Cucumis sativus Cucsa.365550 N 0.722
POPTR_0003s02020 Populus trichocarpa POPTR_0003s02020 N 0.778
POPTR_0010s01510 Populus trichocarpa POPTR_0010s01510 N 0.722
POPTR_0012s01930 Populus trichocarpa POPTR_0012s01930 N 0.833
POPTR_0013s10760 Populus trichocarpa POPTR_0013s10760 N 0.889
ppa025932m Prunus persica ppa025932m N 0.722