CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Genemark.2532_g
(
Serpula lacrymans
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
Genemark.2532_g
T15711_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Genemark.2532_g
CCHC ZF
52
66
FTCFSCGQEGHMARD
Links
Other
CCHC ZF
family RBPs
Other
Serpula lacrymans
RBPs
15 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAH44088
Xenopus laevis
AAH44088
I
0.000
Ame_R016242
Ailuropoda melanoleuca
Ame_R016242
I
0.000
BGIBMGA005733
Bombyx mori
BGIBMGA005733
N
0.000
Cnot4
Rattus norvegicus
ENSRNOG00000010795
I
0.000
CNOT4
Pteropus vampyrus
ENSPVAG00000004905
I
0.000
CNOT4
Pan troglodytes
ENSPTRG00000019727
I
0.000
CNOT4
Oryzias latipes
ENSORLG00000003727
I
0.000
CNOT4
Oryctolagus cuniculus
ENSOCUG00000013448
I
0.000
CNOT4
Ornithorhynchus anatinus
ENSOANG00000005006
I
0.000
CNOT4
Sorex araneus
ENSSARG00000009778
I
0.000
CNOT4
Tupaia belangeri
ENSTBEG00000002202
I
0.000
CNOT4
Taeniopygia guttata
ENSTGUG00000009161
I
0.000
CNOT4
Tetraodon nigroviridis
ENSTNIG00000016000
I
0.000
CNOT4
Takifugu rubripes
ENSTRUG00000016861
I
0.000
CNOT4
Tarsius syrichta
ENSTSYG00000000893
I
0.000
CNOT4
Tursiops truncatus
ENSTTRG00000005122
I
0.000
cnot4
Xenopus tropicalis
ENSXETG00000010594
I
0.000
Cnot4
Mus musculus
ENSMUSG00000038784
I
0.000
CNOT4
Monodelphis domestica
ENSMODG00000014068
I
0.000
CNOT4
Macaca mulatta
ENSMMUG00000016181
I
0.000
CNOT4
Canis familiaris
ENSCAFG00000003223
I
0.000
CNOT4
Choloepus hoffmanni
ENSCHOG00000010412
I
0.000
CNOT4
Callithrix jacchus
ENSCJAG00000012532
I
0.000
CNOT4
Cavia porcellus
ENSCPOG00000011526
I
0.000
CNOT4
Danio rerio
ENSDARG00000007045
I
0.000
CNOT4
Equus caballus
ENSECAG00000020262
I
0.000
CNOT4
Echinops telfairi
ENSETEG00000013407
I
0.000
CNOT4
Homo sapiens
ENSG00000080802
D
0.000
CNOT4
Gasterosteus aculeatus
ENSGACG00000004276
I
0.000
CNOT4
Microcebus murinus
ENSMICG00000001667
I
0.000
CNOT4
Meleagris gallopavo
ENSMGAG00000011788
I
0.000
CNOT4
Loxodonta africana
ENSLAFG00000000709
I
0.000
CNOT4
Gorilla gorilla
ENSGGOG00000000142
I
0.000
CNOT4
Anolis carolinensis
ENSACAG00000011154
I
0.000
ENSPPYG00000018026
Pongo pygmaeus
ENSPPYG00000018026
I
0.000
Q5BIS2_BOVIN
Bos taurus
ENSBTAG00000017919
I
0.000
Q5ZJC9_CHICK
Gallus gallus
ENSGALG00000011682
I
0.000
zgc:63566
Danio rerio
ENSDARG00000007639
I
0.000