CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LjSGA_077546.1
(
Lotus japonicus
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LjSGA_077546.1
T15939_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LjSGA_077546.1
CCHC ZF
101
118
VTCYNCGKPGHISRYCRL
Links
Other
CCHC ZF
family RBPs
Other
Lotus japonicus
RBPs
28 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAH78008
Xenopus laevis
AAH78008
N
0.000
CG5516
Drosophila melanogaster
FBgn0038389
N
0.000
e_gw.326.71.1
Branchiostoma floridae
e_gw.326.71.1
N
0.000