CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
LOC_Os10g27470
(
Oryza sativa
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
LOC_Os10g27470
T20150_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os10g27470.1
KH
60
117
VFRMLIPATKVGAVIGHSGERLRRLCEETKACVRVIGGHFAAAERAVIIFAKEQPDEP
LOC_Os10g27470.1
KH
147
213
VARILTPSEQAASLIGDQGSVINYIKKASKTNIHVIDGDLPPVALEDDMIIEIWGLPARVHQALELV
LOC_Os10g27470.1
KH
471
532
IMKMQVPIFYAEAVIGPTGARIDYIRQASGSSVVIKDLDDSAMSIEITGSAATDVQIAEQLI
Links
Other
KH
family RBPs
Other
Oryza sativa
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BRADI3G26697
Brachypodium distachyon
BRADI3G26697
N
0.743
GRMZM2G075039
Zea mays
GRMZM2G075039
N
0.717
SB01G022040
Sorghum bicolor
Sb01g022040
N
0.722