CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CIMG_06323
(
Coccidioides immitis
)
PUF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00806 (PUF)
IPR001313
CIMG_06323
T23778_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CIMG_06323T0
PUF
411
444
AIVNQAYPLMVNRFGNFLVQRCFEHGTSEQVIAI
CIMG_06323T0
PUF
447
480
AIRGNTLSLSMDPFGCHVIQKAFDCVPEDHKAVM
CIMG_06323T0
PUF
487
509
RIPETVIHRYACHVWQKLFELRW
CIMG_06323T0
PUF
524
555
LRGMWHEVALGETGSLVVQNIFENCVEDEKRP
CIMG_06323T0
PUF
559
593
EVLAKIDLLAHGQFGNWCIQHICEHGAPHDKSRAI
CIMG_06323T0
PUF
600
630
ATDYSMDQFASKVVEKCLKIGGSEFLDRYLT
CIMG_06323T0
PUF
644
671
LIDIAGDQYGNYLIQWILMNSAAHQREL
Links
Other
PUF
family RBPs
Other
Coccidioides immitis
RBPs
31 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GA21622-RA
Drosophila pseudoobscura
FBgn0081607
I
0.000
GE13838
Drosophila yakuba
FBgn0231486
I
0.000
GH22768
Drosophila grimshawi
FBgn0130225
I
0.000
GJ21415
Drosophila virilis
FBgn0208541
I
0.000
GK15699
Drosophila willistoni
FBgn0217702
I
0.000
sm
Drosophila melanogaster
FBgn0003435
D
0.000