CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CHGG_03355
(
Chaetomium globosum
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CHGG_03355
T28599_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CHGT_03355
RRM
35
101
EMSFYTTEEQVYELFSKCGEIKRLVMGLDRFNKTPCGFCFVEYYTHQDALDCMKYIGGTKLDERIIR
Links
Other
RRM
family RBPs
Other
Chaetomium globosum
RBPs
55 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ACLA_080400
Aspergillus clavatus
CADACLAG00007885
N
0.910
AFLA_046450
Aspergillus flavus
CADAFLAG00005972
N
0.819
AFUA_2G08570
Aspergillus fumigatus
CADAFUAG00004718
N
0.847
estExt_fgenesh1_kg.C_sca_10_chr8_2_00014
Nectria haematococca
estExt_fgenesh1_kg.C_sca_10_chr8_2_00014
N
0.875
estExt_Genewise1Plus.C_150343
Trichoderma atroviride
estExt_Genewise1Plus.C_150343
N
0.889
estExt_Genewise1Plus.C_40730
Myceliophthora thermophila
estExt_Genewise1Plus.C_40730
N
0.903
FOXG_09405
Fusarium oxysporum
FOXG_09405
N
0.940
NFIA_084190
Neosartorya fischeri
CADNFIAG00008064
N
0.847
Pa_7_2520
Podospora anserina
Pa_7_2520
N
0.889
Pc13g04070
Penicillium chrysogenum
Pc13g04070
N
0.847
PMAA_070830
Penicillium marneffei
PMAA_070830
N
0.833