CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CTRG_02448
(
Candida tropicalis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CTRG_02448
T29118_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CTRT_02448
RRM
84
154
LYVGNLPKSASEEMVKDLFSVGGNPIKTIKLLNDKNKAGFNYAFIEYDSNDTADMALNTLNGRVIDESEIK
CTRT_02448
RRM
177
247
IFVGDLSPEVNDEGLRNAFSKFGSLKQAHVMWDMQTSRSRGYGFVTFSEQADAELALQTMNGEWLGGRAIR
CTRT_02448
RRM
378
442
VYLGNIAHFTQQQEIIPLLQNFGFIVDFKFHPERGCAFVKYDTHERAALAIIQLAGFNLNGRPLK
Links
Other
RRM
family RBPs
Other
Candida tropicalis
RBPs
7 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_fgenesh1_pg.C_760018
Melampsora laricis populina
estExt_fgenesh1_pg.C_760018
N
0.000