amel4_ncbi_hmm65494 (Apis mellifera)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 amel4_ncbi_hmm65494 T31936_0.6 DroSpeGe (2008-Jul-18)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Rbp1-like
M121_0.6 		Drosophila melanogaster AUCADCR RNAcompete
Ray et al.(2013)
RNCMPT00127 		0.909
Rbp1
M336_0.6 		Drosophila melanogaster Sequence logo not available AUCYNNA SELEX
Cook et al.(2011)
804_7664738.1 		0.894
Rbp1
M335_0.6 		Drosophila melanogaster Sequence logo not available DCADCUUUA SELEX
Cook et al.(2011)
804_7664738 		0.894
Rbp1
M056_0.6 		Drosophila melanogaster WCAACRR RNAcompete
Ray et al.(2013)
RNCMPT00058 		0.894
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
amel4_ncbi_hmm65494 RRM 17 82

Links

Other RRM family RBPs
Other Apis mellifera RBPs

78 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AMAG_03037 Allomyces macrogynus AMAG_03037 N 0.000
AMAG_10316 Allomyces macrogynus AMAG_10316 N 0.000
CC1G_04203 Coprinopsis cinerea CC1G_04203 N 0.000
CNBG_2621 Cryptococcus neoformans CNBG_2621 N 0.000
DEHA0G13255g Debaryomyces hansenii DEHA0G13255g N 0.000
EDP42905.1 Malassezia globosa EDP42905.1 N 0.000
estExt_fgenesh1_pm.C_80030 Sporobolomyces roseus estExt_fgenesh1_pm.C_80030 N 0.000
estExt_fgenesh2_kg.C_20318 Agaricus bisporus estExt_fgenesh2_kg.C_20318 N 0.000
estExt_fgenesh2_pg.C_60255 Schizophyllum commune estExt_fgenesh2_pg.C_60255 N 0.000
estExt_fgenesh3_kg.C_20205 Heterobasidion annosum estExt_fgenesh3_kg.C_20205 N 0.000
estExt_fgeneshMC_kg.C_70074 Mucor circinelloides estExt_fgeneshMC_kg.C_70074 N 0.000
estExt_fgeneshMC_pm.C_20555 Mucor circinelloides estExt_fgeneshMC_pm.C_20555 N 0.000
estExt_fgeneshPB_pm.C_440010 Phycomyces blakesleeanus estExt_fgeneshPB_pm.C_440010 N 0.000
estExt_genemark.C_11050 Pleurotus ostreatus estExt_genemark.C_11050 N 0.000
estExt_Genewise1.C_110099 Tremella mesenterica estExt_Genewise1.C_110099 N 0.000
estExt_Genewise1Plus.C_1210056 Postia placenta estExt_Genewise1Plus.C_1210056 N 0.000
estExt_Genewise1Plus.C_21802 Schizophyllum commune estExt_Genewise1Plus.C_21802 N 0.000
e_gw1.49.8.1 Melampsora laricis populina e_gw1.49.8.1 N 0.000
gww1.8.38.1 Laccaria bicolor gww1.8.38.1 N 0.000
pab1 Schizosaccharomyces pombe SPAC57A7.04c N 0.000
PGTG_10266 Puccinia graminis PGTG_10266 N 0.000
RO3G_03072 Rhizopus oryzae RO3G_03072 N 0.000
RO3G_08705 Rhizopus oryzae RO3G_08705 N 0.000
RO3G_11747 Rhizopus oryzae RO3G_11747 N 0.000
SJAG_01222 Schizosaccharomyces japonicus SJAG_01222 N 0.000
SJAG_04427 Schizosaccharomyces japonicus SJAG_04427 N 0.000
SPOG_04913 Schizosaccharomyces cryophilus SPOG_04913 N 0.000
SPPG_01610 Spizellomyces punctatus SPPG_01610 N 0.000
UM03494 Ustilago maydis UM03494 N 0.000