CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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BRADI1G08597
(
Brachypodium distachyon
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
BRADI1G08597
T33116_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
BRADI1G08597.1
RRM
11
78
VRVRNISDLAGEREVREFFSFSGEIEHVDIRFDGVATGRTAYVTFKEPKALEIALLLSGATIVDRVVN
Links
Other
RRM
family RBPs
Other
Brachypodium distachyon
RBPs
8 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
B9IPS4_POPTR
Populus trichocarpa
POPTR_0019s05350
N
0.706
BGIOSIBCE012964
Oryza indica
BGIOSIBCE012964
N
0.739
Glyma16g04290.1
Glycine max
Glyma16g04290.1
N
0.706
GRMZM2G172011
Zea mays
GRMZM2G172011
N
0.841
GSVIVG00022464001
Vitis vinifera
GSVIVG00022464001
N
0.721
LOC_Os03g53770
Oryza sativa
LOC_Os03g53770
N
0.971
PDK_20s1386251g001
Phoenix dactylifera
PDK_20s1386251g001
N
0.721
SB01G008070
Sorghum bicolor
Sb01g008070
N
0.841