CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CBG13971
(
Caenorhabditis briggsae
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CBG13971
T33912_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CBG13971
RRM
10
81
LYINNLNEKIKIDELRKSLFAVFKQFGEILDVMCFRTLKMRGQAHIIFAEIPHATAAKEALSGFPFYEKPMK
CBG13971
RRM
134
199
LFCTNLPDSATAEMLEIMFNQFPGLKDIRMVPNRPGIAFVEFDTDSLAIPARTTLNNFRISAEHVM
Links
Other
RRM
family RBPs
Other
Caenorhabditis briggsae
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CBN16829
Caenorhabditis brenneri
CBN16829
N
0.906
CRE11521
Caenorhabditis remanei
CRE11521
N
0.906
rnp-2
Caenorhabditis elegans
K08D10.4
N
0.899